Hi Michael,
Often these segmentation faults have to do with glitches in the
connections between different nodes on a cluster. Not much one can do
against it. Just restart from the last completed iteration and try
again...
HTH, S
> Dear all,
>
> I wondered if anybody has an idea what may have gone wrong, if the error
> posted below appears at the end of the very last iteration of the
> auto-refine procedure. Every iteration until then worked flawlessly. I
> looked up libpthread.so.0 and it exists in the directory mentioned in the
> error. I would appreciate any input.
>
> Cheers,
>
> Michael
>
> error message:
>
> 14.09/14.09 hrs
> ............................................................~~(,_,">
> [beo-06:20359] *** Process received signal ***
> [beo-06:20359] Signal: Segmentation fault (11)
> [beo-06:20359] Signal code: Address not mapped (1)
> [beo-06:20359] Failing at address: (nil)
> [beo-06:20359] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0)
> [0x2b51621e3cb0]
> [beo-06:20359] *** End of error message ***
> [beo-08][[33530,1],1][btl_tcp_frag.c:215:mca_btl_tcp_frag_recv]
> mca_btl_tcp_frag_recv: readv failed: Connection reset by peer (104)
>
>
>
>
>
>
> ------------------------------------------------------------
>
> Dr. Michael Saur
>
> Institute of Zoology, AG Markl
> Müllerweg 6, Room 01-232
> 55118 Mainz
> Germany
>
> Phone: +49 6131 - 39 23091
> E-mail: [log in to unmask]
>
> ------------------------------------------------------------
>
--
Sjors Scheres
MRC Laboratory of Molecular Biology
Francis Crick Avenue, Cambridge Biomedical Campus
Cambridge CB2 0QH, U.K.
tel: +44 (0)1223 267061
http://www2.mrc-lmb.cam.ac.uk/groups/scheres
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