Hi Yuri,
Slight typo below, it should read "_not_ updated with twopass"..
Kind Regards
Matthew
> HelloYuri,
> The twopass option only works with "normal" -c clustering and tfce, clustermass stats are updated with twopass.
>
> Kind Regards
>
> Matthew
>
>> Dear FSL experts,
>>
>> I'm Yuri Nagahara. I'm conducting a research using TBSS.
>>
>> I tried the non-stationarity correction option of the randomise using command line as shown below.
>>
>> randomise -i all_FA_skeletonised -o tbss -m mean_FA_skeleton_mask -d design.mat -t design.con -n 10000 -C 3 --twopass
>>
>> Terminal run without any error, but the name of output-file was same as the name of output-file without --twopass option as below.
>>
>> tbss_clusterm_corrp_tstat1.nii.gz
>> tbss_clusterm_corrp_tstat2.nii.gz
>>
>> Can you please tell me how can I know if --twopass option have worked successfully and what is a name of the output-file after using --twopass option?
>>
>> I used FSL 4.1.9 on MacPro, Mac OS X Lion 10.7.5.
>>
>>
>> Thanks in advance.
>>
>>
>> Yuri Nagahara, M.D.
>> Department of Psychiatry, Graduate School of Medical Science,
>> Kyoto Prefectural University of Medicine,
>>
>
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