Dear Jesper
Ah...
It exactly beginner's error...
Now It work..
Thank you very much!!
Masaki
> Dear masaki,
>
> it is --datain, not --datatin.
>
> Jesper
>
> On 28 Jun 2013, at 08:19, masaki YOSHIDA wrote:
>
>> Dear FSL expert
>>
>> I'm new for topup/applytopup function.
>>
>> After topup execution, when I run appytopup as follow,,,,,,
>>
>> ---------------------------------------------------
>> bash-3.2$ ls
>> b0_blip_down.nii.gz both_b0.topup_log
>> b0_blip_up.nii.gz my_acq_param.txt
>> blip_down.nii.gz
>> my_topup_results_fieldcoef.nii.gz
>> blip_up.nii.gz my_topup_results_movpar.txt
>> both_b0.nii.gz
>> bash-3.2$ applytopup --imain=blip_up,blip_down --inindex=1,2
>> --datatin=my_acq_param.txt --topup=my_topup_result --out=my_topup_image
>>
>> Part of FSL (build 504)
>> applytopup (Version 1.0)
>> Copyright(c) 2009, University of Oxford (Jesper Andersson)
>>
>> Usage:
>> applytopup -in=topdn,botup --topup=mytu --inindex=1,2 --out=hifi
>> applytopup -in=topdn --topup=mytu --inindex=1 --method=jac
>> --interp=spline
>> --out=hifi
>>
>> --datatin: Option doesn't exist!
>>
>> ---------------------------------------------------------------
>>
>> I simply follow example running topup followed by appytopup example
>> running in the wiki
>> (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/TOPUP/ExampleTopupFollowedByApplytopup#Example_of_running_topup_followed_by_applytopup
>> )
>>
>> Can I have some solution?
>>
>> Thank You in advance
>>
>> Masaki Yoshida MD
>> Tokyo Tokyu Hospital
>>
>
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