Hi Mark,
all images I used for randomise have the same size: 91 x 109 x 109 voxels and 2 x 2 x 2 min.
The mask size before the shadow registration is different for every subject, e.g. 139 x 180 x 154 voxels.
Here my randomise command:
randomise -i GM_mod_merg_s2 -o GM_mod_merg_s2 -m min_flipped-mask_GM.nii.gz -d paired_t-test.mat -t paired_t-test.con -e paired_t-test.grp -n 5000 -T -V
Best,
Anna
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