Hi,
You need an equals sign and no spaces for double minus options.
So your command should be:
fslmeants -i func_img.nii.gz -o meants.txt --label=aal_roi.nii.gz
All the best,
Mark
On 30 May 2013, at 12:10, Ricardo Magalhaes <[log in to unmask]> wrote:
> Hi FSL users.
> I'm trying to use fslmeants to extract all the mean time series from different brain regions, using the --label option. I'm using a fMRI image, wich i verified has no problems as input, and a image with 116 different regions (the AAL atlas). I'm expecting to get a file, indicating for each pair of time point/brain region, the mean time series of all the voxels within each region. Instead all i am getting is a the following error message:
> terminate called throwing an exceptionAbort trap: 6
> I never had any problem with using any of the images before on FSL, and i am even able to use them individually with fslmeants and a space coordinate. Am I understanding wrong how the --label option works? Here is a example of how i am using it
> fslmeants -i func_img.nii.gz -o meants.txt --label aal_roi.nii.gz
>
> Any help would be very much appreciated. Thanks, Ricardo
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