Try FTsite: http://ftsite.bu.edu/.
Gang
On Wed, May 29, 2013 09:17, Karsten Niefind wrote:
> Dear colleagues,
>
> please allow me to ask crystallography experts for advice in a
> bioinformatics issue:
>
> Which methods (programs, servers) would you use and recommend to search
> computationally on the surface of a protein/protein complex (> 1100 aa)
> for concave and
> convex interaction sites with potential ligands of any kind
> (preferentially other proteins and
> peptides, but also nucleic acids or small metabolites and with emphasis on
> "potential", i.e. if
> no concrete ligand is known)?
>
> Thanks for any help from
>
> Karsten Niefind
>
>
> -------------------------------
> Karsten Niefind
> University of Cologne
> Department of Chemistry
> Institute of Biochemistry
> Otto-Fischer-Str. 12-14
> D-50674 Cologne
> Tel.: +49 221 470 6444
> Fax: +49 221 470 3244
>
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