Wenzong,
You may want to look at rosetta's design modules.
Pete
Wenzong Li wrote:
> I want to build the loop based on a computer screen against my peptide.
>
> Thanks
>
> Wenzong
>
> ----- Original Message -----
> From: "Joel Tyndall" <[log in to unmask]>
> To: "Wenzong Li" <[log in to unmask]>, [log in to unmask]
> Sent: Monday, April 22, 2013 6:10:09 PM
> Subject: RE: [ccp4bb] Modelling Software for beta turn design
>
> Dear Wenzong,
>
> Could you provide a bit more details please? Do you simply require some visualisation tool e.g. pymol to superimpose your turn mimic on your protein/peptide structure or are you looking for more indepth modelling to say identify new scaffolds to build amino acid sidechains onto based on an insilico screen against your peptide? The latter requires more high end software
>
> Cheers
>
> Joel
>
> -----Original Message-----
> From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of Wenzong Li
> Sent: Monday, 22 April 2013 3:48 p.m.
> To: [log in to unmask]
> Subject: [ccp4bb] Modelling Software for beta turn design
>
> Dear All,
>
> I want to use modelling software to design a tight beta turn replacing a loop between two beta strands. Can anyone suggest a program to do this sort of modelling?
>
> Thank you
> Wenzong
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