Dear Jake,
The log file seems to show that the initialisation, prestats, stats, and registration run (the last lines are in the registration: /usr/local/fsl/bin/imcp ../example_func ../example_func_distorted
/usr/local/fsl/bin/imcp example_func ../example_func
However, in the stats directory in the output I only have
Corrections.nii.gz
dof
logfile
pe1.nii.gz
pe2.nii.gz
res4d.nii.gz
sigmasquareds.nii.gz
smoothness
threshac1.nii.gz
Thank you so much for your help!
~ mary
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