Dear Mary,
It is hard to know exactly what went wrong from just this info. Can you send the whole contents of your log file?
All the best,
Mark
Mary Elizabeth Sutherland <[log in to unmask]> wrote:
Dear Jake,
The log file seems to show that the initialisation, prestats, stats, and registration run (the last lines are in the registration: /usr/local/fsl/bin/imcp ../example_func ../example_func_distorted
/usr/local/fsl/bin/imcp example_func ../example_func
However, in the stats directory in the output I only have
Corrections.nii.gz
dof
logfile
pe1.nii.gz
pe2.nii.gz
res4d.nii.gz
sigmasquareds.nii.gz
smoothness
threshac1.nii.gz
Thank you so much for your help!
~ mary
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