superpose and gesamt in ccp4
On 14 Mar 2013, at 20:53, Chen Zhao wrote:
> Dear all,
>
> I am now struggling to align two 3D RNA structures. I know there are a bunch of web servers, but they either just generated a pdb file with a single "aligned" structure, or they left the ligand out.
>
> Does any of you have some recommendations?
>
> Alternatively, is there some software that can calculate the transformation matrix between the coordinates in 2 pdb files? Then I could add the ligand back by myself. I suspect that Matlab is able to do this, but I would save it as the last resort.
>
> Thank you so much!
>
> Best,
> Chen
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