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Dear Chen,
lsqman, lsqkab, and most likely coot should be able to do this.
Best,
Tim
On 03/14/2013 09:53 PM, Chen Zhao wrote:
> Dear all,
>
> I am now struggling to align two 3D RNA structures. I know there
> are a bunch of web servers, but they either just generated a pdb
> file with a single "aligned" structure, or they left the ligand
> out.
>
> Does any of you have some recommendations?
>
> Alternatively, is there some software that can calculate the
> transformation matrix between the coordinates in 2 pdb files? Then
> I could add the ligand back by myself. I suspect that Matlab is
> able to do this, but I would save it as the last resort.
>
> Thank you so much!
>
> Best, Chen
>
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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