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Hello Ed,
did you try creating a ccp4 tree from source and replacing the refmac
source? Maybe that ccp4 environment will help you compile refmac - at
least with refmac I had the least trouble compiling when I got the
ccp4 source.
Why are you trying to do this anyhow? Do Garib's binaries not work
under this Ubuntu installation?
Best,
Tim
On 02/27/2013 06:27 PM, Ed Pozharski wrote:
> I am trying to compile refmac from source on a machine running
> Ubuntu 12.04. In a nutshell, after some troubleshooting I end up
> with executable that generates a segmentation fault. Log-file
> states that
>
>>>>>>> CCP4 library signal ccp4_parser:Failed to open
>>>>>>> external command
> file (Success) raised in ccp4_parser <<<<<<
>
> (hardly a success). Potentially relevant details are that I had to
> compile libccp4 and libmmdb to get to this point. If I don't
> configure the CCP4, I get this when trying to run refmac
>
>>>>>>> CCP4 library signal ccp4_general:Cannot open
>>>>>>> environ.def (Error)
> raised in ccp4fyp <<<<<< refmacgfortran: Cannot open environ.def
> refmacgfortran: Cannot open environ.def
>
> So perhaps it's some incompatibility between libccp4/libmmdb that I
> compiled and those that came with CCP4 installation (by the way,
> the new update feature rocks indeed). But I tried lifting these
> libraries from CCP4 installation when compiling refmac and I get
> the same segmentation fault.
>
> Any suggestions for troubleshooting/advice on how to compile
> refmac from source are appreciated.
>
> Refmac version is 5.7.0032.
>
> Cheers,
>
> Ed.
>
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
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