Hi Christian,
All the data should be ok. I ran melodic before on the first 80 datasets and later on the last 40 datasets and I had no problems.
I am sorry if I am inconsistent, I am trying to give some information in the hope this could help in finding a solution.
Anyway, I tried to run it all over again on my linux pc. The analyses stopped at the PCA part. So, there is no melodic_IC.nii.gz.
I tied to run the command you gave me, but the terminal does nothing.
Enclosed is the gica (below,as it was too big) . I hope this could clarify something.
I am really hoping to find a way to solve this, so any help is appreciated!
Best
Heidi
</pre><hr>Higher-level MELODIC<br><pre>
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A01/rs3NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_VZcEpm --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_SMJJNK --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A02/rs2NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_DqCCQn --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_UI9ZDL --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A03/rs2NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_g3licF --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_taJbs6 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A04/rs1NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_VaINbX --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_Uu0M9m --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A05/rs2NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_57uNtS --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_CRXV5f --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A06/rs2NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_Cct63Q --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_6odd66 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A07/rs3NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_cctNeb --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_Lb3Fvy --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A08/rs1NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_3WTrVd --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_dMvIVu --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A09/rs3NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_PA6Qip --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_HkNNXC --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A10/rs1NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_Eyu23g --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_5XmveH --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A11/rs3NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_UC8xFr --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_xFE4PO --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A12/rs1NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_IAaj3C --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_JBQ1t3 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A13/rs1NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_0aUPwh --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_1xJelH --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A14/rs3NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_kbqojo --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_4HyQGL --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A15/rs3NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_n79Q06 --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_TQ9hNp --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A16/rs1NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_G7gj68 --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_WNewQq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A17/rs2NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_p8xA3l --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_iguDhS --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A18/rs2NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_DqjDnQ --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_u2rSrh --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A19/rs2NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_VpkPz1 --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_uSXeGq --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_PRE/A20/rs1NI_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_CTzv6f --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_1pw3UH --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A01/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_WKamVf --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_1ulGQJ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A02/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_wVlKu6 --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_hiP1yv --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A03/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_7I6ajz --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_G9QQQZ --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A04/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_jYhgQN --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_6CaWYe --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A05/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_I01Ufs --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_r4vAHS --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A06/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_juuptl --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_RfT9tE --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A07/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_2GhQ8K --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_HkxF67 --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A08/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_nQWssQ --warp=reg/highres2standard_warp --interp=sinc
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=filtered_func_data --out=frgrot_WK18ne --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=trilinear
/usr/share/fsl/4.1/bin/fslmaths reg_standard/filtered_func_data -Tstd -bin reg_standard/mask -odt char
/usr/share/fsl/4.1/bin/featregapply /local/SUBJECTS/RIMCAD_POST1/A09/rsfmri_Cons_short_output_RIMCAD_120+.ica
/usr/share/fsl/4.1/bin/flirt -ref reg/standard -in reg/standard -out reg_standard/standard -applyisoxfm 2.0
/usr/share/fsl/4.1/bin/applywarp --ref=reg_standard/standard --in=reg/highres --out=frgrot_r9l9JV --warp=reg/highres2standard_warp --interp=sinc
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/local/SUBJECTS/RIMCAD_POST1/A15/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/A16/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/A17/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/A18/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/A19/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/A20/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A01/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A02/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A03/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A04/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A05/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A06/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A07/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A08/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A09/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A10/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A11/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A12/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A13/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A14/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A15/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A16/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A17/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A18/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A19/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/A20/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J01/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J02/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J03/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J04/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J06/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J07/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J08/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J09/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J10/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J11/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J12/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J13/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J14/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J15/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J16/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J17/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J18/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J19/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J20/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_PRE/J21/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J01/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J02/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J03/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J04/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J06/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J07/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J08/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J09/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J10/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J11/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J12/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J13/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J14/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J15/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J16/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J17/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J18/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J19/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J20/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST1/J21/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J01/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J02/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J03/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J04/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J06/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J07/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J08/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J09/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J10/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J11/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J12/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J13/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J14/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J15/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J16/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J17/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J18/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J19/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J20/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask /local/SUBJECTS/RIMCAD_POST2/J21/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask
mkdir -p inputreg
/usr/share/fsl/4.1/bin/fslmaths ../mask -mul 120 -Tmean masksum -odt short
/usr/share/fsl/4.1/bin/fslmaths masksum -thr 120 -add masksum masksum
/usr/share/fsl/4.1/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 240 masksum_overlay
/usr/share/fsl/4.1/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png
/usr/share/fsl/4.1/bin/fslmaths masksum -mul 0 maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A01/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 1 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A02/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 2 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A03/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 3 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A04/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 4 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A05/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 5 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A06/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 6 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A07/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 7 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A08/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 8 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A09/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 9 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A10/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 10 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A11/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 11 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A12/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 12 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A13/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 13 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A14/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 14 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A15/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 15 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A16/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 16 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A17/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 17 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A18/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 18 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A19/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 19 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/A20/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 20 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A01/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 21 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A02/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 22 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A03/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 23 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A04/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 24 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A05/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 25 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A06/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 26 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A07/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 27 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A08/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 28 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A09/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 29 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A10/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 30 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A11/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 31 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A12/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 32 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A13/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 33 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A14/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 34 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A15/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 35 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A16/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 36 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A17/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 37 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A18/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 38 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A19/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 39 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/A20/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 40 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A01/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 41 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A02/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 42 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A03/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 43 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A04/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 44 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A05/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 45 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A06/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 46 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A07/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 47 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A08/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 48 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A09/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 49 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A10/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 50 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A11/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 51 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A12/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 52 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A13/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 53 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A14/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 54 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A15/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 55 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A16/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 56 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A17/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 57 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A18/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 58 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A19/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 59 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/A20/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 60 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J01/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 61 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J02/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 62 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J03/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 63 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J04/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 64 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J06/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 65 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J07/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 66 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J08/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 67 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J09/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 68 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J10/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 69 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J11/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 70 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J12/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 71 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J13/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 72 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J14/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 73 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J15/rs3NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 74 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J16/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 75 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J17/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 76 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J18/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 77 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J19/rs1NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 78 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J20/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 79 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_PRE/J21/rs2NI_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 80 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J01/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 81 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J02/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 82 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J03/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 83 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J04/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 84 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J06/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 85 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J07/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 86 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J08/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 87 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J09/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 88 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J10/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 89 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J11/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 90 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J12/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 91 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J13/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 92 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J14/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 93 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J15/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 94 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J16/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 95 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J17/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 96 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J18/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 97 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J19/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 98 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J20/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 99 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST1/J21/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 100 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J01/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 101 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J02/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 102 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J03/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 103 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J04/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 104 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J06/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 105 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J07/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 106 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J08/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 107 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J09/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 108 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J10/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 109 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J11/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 110 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J12/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 111 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J13/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 112 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J14/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 113 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J15/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 114 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J16/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 115 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J17/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 116 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J18/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 117 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J19/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 118 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J20/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 119 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths /local/SUBJECTS/RIMCAD_POST2/J21/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/mask -mul -1 -add 1 -mul 120 -add maskunique maskunique
/usr/share/fsl/4.1/bin/fslmaths masksum -thr 119 -uthr 119 -bin -mul maskunique maskunique
/usr/share/fsl/4.1/bin/overlay 0 0 ../bg_image -a maskunique 0.9 120 maskunique_overlay
/usr/share/fsl/4.1/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png
/bin/cp /usr/share/fsl/4.1/etc/luts/ramp.gif .ramp.gif
/usr/share/fsl/4.1/bin/fslmaths mask -Tmin -bin mask -odt char
/usr/share/fsl/4.1/bin/melodic -i .filelist -o groupmelodic.ica -v --nobet --bgthreshold=10 --tr=3.0 --report --guireport=../../report.html --bgimage=bg_image -d 0 --mmthresh=0.5 --Ostats -a concat --Sdes=/local/output120_19022013.mat --Scon=/local/output120_19022013.con
Melodic Version 3.10
Melodic results will be in groupmelodic.ica
Create mask ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A01/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Estimating data smoothness ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A02/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A03/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A04/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A05/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A06/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A07/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A08/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A09/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A10/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A11/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A12/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A13/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A14/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A15/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A16/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A17/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A18/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A19/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A20/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A01/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A02/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A03/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A04/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A05/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A06/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A07/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A08/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A09/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A10/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A11/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A12/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A13/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A14/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A15/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A16/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A17/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A18/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A19/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A20/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A01/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A02/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A03/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A04/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A05/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A06/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A07/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A08/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A09/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A10/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A11/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A12/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A13/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A14/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A15/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A16/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A17/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A18/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A19/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A20/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J01/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J02/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J03/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J04/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J06/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J07/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J08/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J09/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J10/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J11/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J12/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J13/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J14/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J15/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J16/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J17/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J18/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J19/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J20/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J21/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J01/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J02/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J03/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J04/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J06/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J07/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J08/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J09/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J10/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J11/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J12/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J13/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J14/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J15/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J16/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J17/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J18/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J19/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J20/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/J21/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J01/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J02/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J03/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J04/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J06/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J07/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J08/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J09/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J10/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J11/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J12/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J13/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J14/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J15/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J16/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J17/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J18/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J19/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J20/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/J21/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Excluding voxels with constant value ... done
Normalising jointly by voxel-wise variance ... done
Initial data size : 191 x 275766
Reading data file /local/SUBJECTS/RIMCAD_PRE/A01/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A02/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A03/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A04/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A05/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A06/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A07/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A08/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A09/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A10/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A11/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A12/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A13/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A14/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A15/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A16/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A17/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A18/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A19/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/A20/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A01/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A02/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A03/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A04/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A05/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A06/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A07/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A08/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A09/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A10/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A11/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A12/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A13/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A14/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A15/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A16/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A17/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A18/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A19/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST1/A20/rsfmri_Cons_short_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A01/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A02/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A03/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A04/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A05/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A06/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A07/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A08/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A09/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A10/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A11/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A12/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A13/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A14/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A15/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A16/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A17/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A18/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A19/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_POST2/A20/RIMCAD_CONS2_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J01/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J02/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J03/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J04/rs1NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J06/rs2NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
Removing mean image ... done
Reading data file /local/SUBJECTS/RIMCAD_PRE/J07/rs3NI_output_RIMCAD_120+.ica/reg_standard/filtered_func_data ... done
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Data size : 3360 x 275766
Starting PCA ... terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Aborted
================================================
Dr. Heidi Jacobs
Postdoc researcher
Faculty of Health, Medicine and Life Sciences
School for Mental Health and Neurosciences
Division Cognitive Neuropsychiatry and Clinical Neurosciences
Alzheimer Center Limburg
[log in to unmask]
www.maastrichtuniversity.nl
www.heidijacobs.nl
Dr. Tanslaan 12, 6229 ET Maastricht
P.O. Box 616, 6200 MD Maastricht, The Netherlands
T +31 43 38 84 090 F +31 43 38 84 092
================================================
________________________________________
Van: FSL - FMRIB's Software Library [[log in to unmask]] namens Christian F. Beckmann [[log in to unmask]]
Verzonden: donderdag 21 februari 2013 15:40
Aan: [log in to unmask]
Onderwerp: Re: [FSL] Melodic crashes from gui and command line
Hi Heidi,
This indeed does not sound normal - are you sure all your input data is OK, e.g. there are no NANs in your data etc.
What you are emailing is all very inconsistent. A previous analysis seems to have failed at the mixture modellling stage, right? In this case there will be output files prior to this. Amongst other things you should have a melodic_IC.nii.gz file (or similar, depending on your output type). Now you report that nothing happens for hours, presumably not even a new output directory is being generated? I'm afraid without you being more acurate in your descriptions and error reporting (e.g. by sending the log file if exists) there is little we can do.
can you do a
ls -ltR | grep melodic_IC\*' in a terminal to see what exists and what doesn't
hth
Christian
On 21 Feb 2013, at 09:16, "Jacobs H (NP)" <[log in to unmask]> wrote:
> Hi Matthew,
>
> Thanks for your reply. I started melodic again and will let it run.
> Is it normal that no files are produced during this time? I was checking the output folder of melodic, but no files were added and nothing was added to the log file.
>
> I will let you know what happened.
>
> Thanks!
> Heidi
> ================================================
> Dr. Heidi Jacobs
> Postdoc researcher
> Faculty of Health, Medicine and Life Sciences
> School for Mental Health and Neurosciences
> Division Cognitive Neuropsychiatry and Clinical Neurosciences
> Alzheimer Center Limburg
> [log in to unmask]
> www.maastrichtuniversity.nl
> www.heidijacobs.nl
>
> Dr. Tanslaan 12, 6229 ET Maastricht
> P.O. Box 616, 6200 MD Maastricht, The Netherlands
> T +31 43 38 84 090 F +31 43 38 84 092
> ================================================
> ________________________________________
> Van: FSL - FMRIB's Software Library [[log in to unmask]] namens Matthew Webster [[log in to unmask]]
> Verzonden: woensdag 20 februari 2013 17:03
> Aan: [log in to unmask]
> Onderwerp: Re: [FSL] Melodic crashes from gui and command line
>
> Hello Heidi,
> For a data set as large as yours a 35 hour+ runtime is not implausible - can you rerun the command line call that did _not_ use --report and leave it running? It might also be worth monitoring the jobs memory usage ( e.g. with top ) to make sure it does not exceed 12Gb.
>
> Kind Regards
>
> Matthew
>> Dear Christian,
>>
>> Thanks for your feedback. I tried to run melodic from the command line as you suggested.
>> As no report was generated by firefox, I ran it without the -report.
>> I aborted the computer after 35 hours, as nothing was happening (even though the CPU was working for about 96%, seems like a crash). Melodic generated no file.
>> To make sure it is not the code generating the figures, as you thought, I ran 4 subjects (2 by 2) and that was no problem. In less than 3 hours, Melodic finished successfully.
>> I did analyses on 80 out of these 120 people, and that was neither a problem. Could it be that 120 people is too much for melodic?
>> I don't think my computer is not powerful enough (intel i7, 3.8Ghz, 12GB memory, quad core) and I did run everything within Centos.
>>
>> Is it normal that it would take this long? Or is something else going on? I am desperate now, I have no idea what I could do?
>> Any help or advice is welcome.
>> Thanks!
>> Heidi
>> ________________________________________
>> Van: FSL - FMRIB's Software Library [[log in to unmask]] namens Christian F. Beckmann [[log in to unmask]]
>> Verzonden: dinsdag 12 februari 2013 22:57
>> Aan: [log in to unmask]
>> Onderwerp: Re: [FSL] 120 subjects Melodic: only one component?
>>
>> Hi Heidi,
>>
>> I think you're reporting a whole set of unrelated things here. It looks like Melodic finishes and the mixture modelling does crash on your data. Can you do the following:
>> (i) run melodic from the command line for the mixture modelling only:
>>
>> melodic -i bgimage --ICs=melodic_IC --mix=melodic_mix -v --report --Ostats
>>
>> and report on what you're getting.
>>
>> If that crashes then please run the same without the --report - if that works then the problem is in the code generating the figures, not anything to do with data size or number of subjects.
>>
>> hth
>> Christian
>>
>>
>>
>>
>>
>>
>> On 12 Feb 2013, at 22:46, "Jacobs H (NP)" <[log in to unmask]> wrote:
>>
>>> Hi all,
>>>
>>> I have been trying to run melodic on 120 subjects. However, melodic seems to stop after giving me one component in the firefox output (mixture modelling). The melodic_IC.nii.gz is complete, showing all 25 components. This was done on the latest version of FSL (5.2) on a Linux machine (Centos 6.3). FSL ran for about 16 hours and then stopped.
>>> I thought I might have been the BBR registration (as I never used that before), but after a 7DOF registration, I got the same problem.
>>>
>>> So, then I tried to run the data on my Macbook pro with FSL version 4.1.9. FSL stopped during the PCA (total run time 25 hours).
>>>
>>> In earlier analyses, I was able to do the melodic on my Macbook pro (80 and 40 subjects) without problems.
>>>
>>> Could it be that 120 subjects it too much for melodic? Any help is appreciated as I have no idea what to do now.
>>>
>>> Any help is appreciated!
>>> Best
>>> Heidi
>>>
>>>
>>>
>>> ================================================
>>> Dr. Heidi Jacobs
>>> Postdoc researcher
>>> Faculty of Health, Medicine and Life Sciences
>>> School for Mental Health and Neurosciences
>>> Division Cognitive Neuropsychiatry and Clinical Neurosciences
>>> Alzheimer Center Limburg
>>> [log in to unmask]
>>> www.maastrichtuniversity.nl
>>> www.heidijacobs.nl
>>>
>>> Dr. Tanslaan 12, 6229 ET Maastricht
>>> P.O. Box 616, 6200 MD Maastricht, The Netherlands
>>> T +31 43 38 84 090 F +31 43 38 84 092
>>> ================================================
>>
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