Hello Colleagues,
I am currently analyzing my DTI data in FSL and Freesurfer. I constructed a cortical map in Freesurfer and want to convert it back to images that can be used by FSL.
I read that Freesurfer functions in Talairach space while FSL functions in MNI. I worry that the simple conversion I am doing below (from mgz to nifti zip) will not account for these differences in space. If anyone has any knowledge on whether FSL grabs MNI co-ordinates from Freesurfer or whether I need to do additional steps, that would be greatly appreciated.
mri_convert brainmask.mgz brainmask.nii.gz
Thank you for any information you can provide me,
Erica Tatham
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