Dear experts,
I want to apply a set of commands on several folders.
For example:
Let say I have n folders named sub01, sub02, ... , subn
Containing the files: Image1.nii image2.nii mask.nii
How can I apply the following short script (written below), to each one of the folders?
>> for filename in Image1.nii image2.nii ; do
fname=`$FSLDIR/bin/remove_ext ${filename}`
fslmaths ${fname} -mas mask.nii ${fname}_brain
done
>> fslmaths Image1.nii -add image2.nii image3.nii
>> fslstats nii image3.nii -V | cut -d " " -f 2 >> img3Vol.txt
Many thanks
Moran
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