Hi All,
I've been using fsl_anat lately and it's working really well. However, for a couple of subjects (5/50) the first command is not producing the T1_first_all_fast_firstseg.nii.gz or T1_first_all_fast_origsegs.nii.gz files so I cannot do a volumetric analysis on them. It does produce all of the .bvars and .vtk files for my chosen regions.
Any idea what might be causing this problem and if there is a work around? I'd hate to loose these subjects!
Thanks,
Gillian
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