Hello All,
I have some small animal brain volumes I'd like to apply mcflirt to for motion correction, but it does a terrible job as the voxel size is too small. Looking at the mcflirt function it appears to start with a course 8mm search followed by a 4mm refined search; and I suspect this search is the problem as 4mm is still far larger than any dimension of my voxel size.
Is there any way to narrow the search range? Say start with 1mm and refine to 0.5mm?
Thanks
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