Hi - Perhaps you've used more (or less) input in tbss_non_FA than you had in the previous tbss stages?
Saad
On 21 Nov 2012, at 11:25, Elif Alkan wrote:
> Dear FSL-group,
>
> I try to run the tbss_non_FA with MD.
> I get this message and the all_MD_skeletonised is not there. I get only the all_MD.nii.gz So I cannot run randomise
>
> "merging all upsampled MD images into single 4D image
> projecting all_MD onto mean FA skeleton
> Image Exception : #5 :: Out of Bounds (time index)
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> /usr/local/fsl/bin/tbss_non_FA: line 104: 23770 Abort trap ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
> now run stats - for example:
> randomise -i all_MD_skeletonised -o tbss_MD -m mean_FA_skeleton_mask -d design.mat -t design.con -n 500 --T2 -V
> (after generating design.mat and design.con)"
>
>
> What can be done? I use Tbss version v1.2.
>
> Thank you for your help!
>
> Elif
>
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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