Hi,
Either use mcflirt with "-revol 0" or use fslsplit, flirt and fslmerge within a script (looping over each volume and calling flirt on it separately).
All the best,
Mark
On 12 Nov 2012, at 21:39, Mithra S <[log in to unmask]> wrote:
>
> Hello all,
>
> I had a basic question on co-registration.
>
> How can I register all the images from one volume to the first image in the volume?
> I am not trying to register the 4D volume to MNI or a stuructural data.
>
> Thanks.
> - Anita.
>
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