Thanks Charles - that seems to work..!
Tony.
---
Dr Antony W Oliver
Senior Research Fellow
CR-UK DNA Repair Enzymes Group
Genome Damage and Stability Centre
Science Park Road
University of Sussex
Falmer, Brighton, BN1 9RQ
email: [log in to unmask]
tel (office): +44 (0)1273 678349
tel (lab): +44 (0)1273 677512
On Nov 26, 2012, at 10:19 AM, Charles Ballard wrote:
> You could give
>
> /Applications/coot.app/Contents/Resources/script
>
> a go.
>
> Charles
>
> On 23 Nov 2012, at 12:20, Antony Oliver wrote:
>
>> Forgive what may be a very simple question…
>>
>> I have recently installed coot using the very nice CCP4 .dmg (0.7.0-i386) - which now puts coot into /Applications
>> I now need to set a $PATH to coot, such that various scripts now 'know' where it is (i.e. Phenix and BUSTER - sorry CCP4-ers).
>>
>> Here I have hit a hurdle. Which binary file do I need to point a path variable to?
>>
>> From terminal I can use the command ' open -a coot ' - everything works fine and dandy.
>> However, I cannot use ' /Applications/coot.app/Contents/MacOS/coot ' reliably - sometimes it works, but most of the time it crashes with the following errors...
>>
>> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: CGSGetSurfaceBounds
>> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
>> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: CGSBindSurface: Invalid window 0x8da
>> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: CGSBindSurface: Invalid window 0x8da
>> Nov 23 12:17:02 coot-real[80005] <Error>: kCGErrorIllegalArgument: CGSBindSurface: Invalid window 0x8da
>>
>> Am I making a school-boy error here?
>>
>> With many thanks,
>>
>> Tony.
>>
>>
>> ---
>> Dr Antony W Oliver
>> Senior Research Fellow
>> CR-UK DNA Repair Enzymes Group
>> Genome Damage and Stability Centre
>> Science Park Road
>> University of Sussex
>> Falmer, Brighton, BN1 9RQ
>>
>> email: [log in to unmask]
>> tel (office): +44 (0)1273 678349
>> tel (lab): +44 (0)1273 677512
>> -
>
>
> --
> Scanned by iCritical.
>
>
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