Hello Mark,
OK, so after running the GUI and looking at the log more closely I saw this error:
Feat main script
../feat_model design
terminate called after throwing an instance of 'NEWMAT::IndexException'
Aborted
then the remaining log seemed to show the prestats running (all I ran was the B0 correction for the EPI for right now).
In the end I did get a new file generated (prefiltered_func_data.nii.gz) and visually I can't really say that it's much different then the original EPI.
I then tried the command line option, using fugue (fugue -i <epi> -p <fieldmap> -d <inter echo time> -u <output name> and the new file has a big black void (a volume in the lower left quadrant), so something is wrong. Do the EPI data and fieldmap data need to be the same dimensions (in x, y, and z)?
Thanks,
Ben
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