Yes, I am using a cluster, but I did not submit that as a cluster job. I did not use "qsub tbbsjob.sh", I simply used "tbss_3_postreg".
I went back and ran it as a series of cluster jobs (i.e. a job for tbss_1_preproc, a job for tbss2, etc...), now it seems to be working.
Is there some problem running on a cluster from the command line rather than as a cluster job?
Thank you for help?
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