Hi John,
Thanks for your answer!
I used "check Reg" to examine the alignment between warped L_precentral.img and raw image. It is similar to that displayed in MRIcron. The warped L_precentral is still in the skull of the raw image.
I also tried "Coreg: reslice" and got the resliced "rL_precentral.img". I checked this rL_precentral.ing with raw image. It is also in the skull of the raw image.
It looks like deformations Utility, spm_write_sn and Coreg_slice, all of them can apply "subject_seg_inv_sn.mat" to L_precentral.img and make similar changes. However, none of them exactly transform L_precentral.img from MNI space to native space.
Are there any problems with my steps???
(P.S. in my first mail, I made a mistake. I wrote using "spm_write_sn ('subject.img', 'subject_seg_inv_sn.mat')", in fact, I used right command "spm_write_sn ('L_precentral.img', 'subject_seg_inv_sn.mat')")
Anyone has already tested transforming smpT.img from MNI space to native space??
Any idea will be appreciated!
Li
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