Dear FSLer's
I also have experienced identical results to those described by Tibor when rerunning some FEAT analyses on the new version under 12.04.1 LTS. I also attempted to prefilter the structural images using SUSAN and segment using FAST to ensure that the files were available in the appropriate directory prior to running FEAT, but got the same result.
Would greatly appreciate any feedback/experience on this matter.
Simon Vogrin | Neuroimaging Scientist | Centre for Clinical Neurosciences & Neurological Research
Room 15 5th Floor Daly Wing | St Vincent’s | 35 Victoria Parade Fitzroy VIC 3065
t: +61 3 9288 3653 | f: +61 3 9288 3350 | m: +61 (0)414 698 463
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From: FSL - FMRIB's Software Library [[log in to unmask]] On Behalf Of Auer, Tibor [[log in to unmask]]
Sent: Friday, 14 September 2012 12:37 AM
To: [log in to unmask]
Subject: Re: [FSL] FSL 5.0 errors (debian)
To my previous report:
I have now attached the full report_log.html.
Auer, Tibor M.D. Ph.D.
Biomedizinische NMR Forschungs GmbH
am Max-Planck Institut für Biophysikalische Chemie
Am Fassberg 11
37077 Göttingen
Germany
Phone/Work: +49-(0)551-201-1725
Phone/Home: +49-(0)551-387-0076
Mobile: +49-(0)176-8012-7921
Mail: [log in to unmask]<mailto:[log in to unmask]>
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Auer, Tibor
Sent: Thursday, September 13, 2012 1:30 PM
To: [log in to unmask]
Subject: [FSL] FSL 5.0 errors (debian)
Dear FSLers,
The new 5.0 build is really exciting with all the improvements and new features. I have installed and tried to re-analyse some previous data; but detected many errors:
1. initial highres is ignored. I have repeated the analysis via Feat GUI and after editing the fsf file. Although, the desing.fsf in the feat folder also contains it, it is ignored in the analysis.
2. pngappend reports error all the time. As a consequence no image is visible in the report*htmls. However, if I use the pngappend in the command line, it works properly.
3. Analysis aborts during calculating post-stats with the “child process exited abnormally” message after successfully executing contrast_mgr. Again, executing the post-stat steps line-by-line works properly and do not generate any error.
4. Minor bug: If MNI standard was entered manually with the extension .nii.gz, an error occurred because no MNI152_T1_2mm_brain.nii.gz_mask_dil was founded.
I am using Ubuntu 12.04 LTS x64 and tried both the neurodebian repository as well as installing from the tar.gz with no difference.
Thanks,
Auer, Tibor M.D. Ph.D.
Biomedizinische NMR Forschungs GmbH
am Max-Planck Institut für Biophysikalische Chemie
Am Fassberg 11
37077 Göttingen
Germany
Phone/Work: +49-(0)551-201-1725
Phone/Home: +49-(0)551-387-0076
Mobile: +49-(0)176-8012-7921
Mail: [log in to unmask]<mailto:[log in to unmask]>
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