Hi, I have the same problem and same error message. Running on OS X 10.7.4 too, python is installed, as well the last FSL release and Stephen's patch.
Thanks,
Flavia
p.s. Will, you can find the patch here
https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1209&L=FSL&P=R44636&1=FSL&9=A&J=on&d=No+Match%3BMatch%3BMatches&z=4
Flavia Mancini, PhD
---
Research Associate
Institute of Cognitive Neuroscience
University College London
London WC1N 3AR
United Kingdom
On 18 Sep 2012, at 17:25, Auer, Tibor wrote:
> Hi,
>
> you could try the fslio.tcl patch emailed by Stephen into the list last week?
>
> Ave,
>
> Auer, Tibor M.D. Ph.D.
> Biomedizinische NMR Forschungs GmbH
> am Max-Planck Institut für Biophysikalische Chemie
> Am Fassberg 11
> 37077 Göttingen
> Germany
> Phone/Work: +49-(0)551-201-1725
> Phone/Home: +49-(0)551-387-0076
> Mobile: +49-(0)176-8012-7921
> Mail: [log in to unmask]
>
>
>> -----Original Message-----
>> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
>> Behalf Of Wil Cunningham
>> Sent: Tuesday, September 18, 2012 6:11 PM
>> To: [log in to unmask]
>> Subject: [FSL] Post-stats in FSL 5.0
>>
>> Hello,
>> I downloaded and I am playing with FSL 5.0. Thanks for the updates!
>>
>> We are running this on Mac OS 10.7.4
>>
>> I am hitting a snag in the post-stats at the moment that I can't figure out. I
>> have played through many options (with and without motion, with and
>> without high pass filters, etc.), and every time, it fails at the post-stats.
>>
>> I am currently getting this error:
>> _________________________________________
>> Post-stats
>>
>> /usr/local/fsl/bin/contrast_mgr stats design.con child process exited
>> abnormally
>> while executing
>> "if { [ catch {
>>
>>
>>
>> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
>> switch -- [ lindex $argv $argindex ] {
>>
>> -I {
>> incr argin..."
>> (file "/usr/local/fsl/bin/feat" line 119) child process exited abnormally
>> while executing
>> "if { [ catch {
>>
>>
>>
>> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
>> switch -- [ lindex $argv $argindex ] {
>>
>> -I {
>> incr argin..."
>> (file "/usr/local/fsl/bin/feat" line 119)
>>
>> _________________________________________
>>
>> I also notice sometimes, but not always this error earlier:
>>
>> /usr/local/fsl/bin/fsl_sub -T 0 -l logs -N feat4_post -j 39759
>> /usr/local/fsl/bin/feat
>> /Users/wc1/duplex/JULY10_2007A/s008a001_full_6hp_noMotion.feat/desig
>> n.fsf -D
>> /Users/wc1/duplex/JULY10_2007A/s008a001_full_6hp_noMotion.feat -
>> poststats 0 0 child process exited abnormally
>> while executing
>> "if { [ catch {
>>
>>
>>
>> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
>> switch -- [ lindex $argv $argindex ] {
>>
>> -I {
>> incr argin..."
>> (file "/usr/local/fsl/bin/feat" line 119)
>>
>> /usr/local/fsl/bin/fsl_sub -T 119 -l logs -N feat4_post -j 38250
>> /usr/local/fsl/bin/feat
>> /Users/wc1/duplex/JULY10_2007A/s008a001_full_6hp_noMotion.feat/desig
>> n.fsf -D
>> /Users/wc1/duplex/JULY10_2007A/s008a001_full_6hp_noMotion.feat -
>> poststats 1 0 child process exited abnormally
>> while executing
>> "if { [ catch {
>>
>>
>>
>> for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
>> switch -- [ lindex $argv $argindex ] {
>>
>> -I {
>> incr argin..."
>> (file "/usr/local/fsl/bin/feat" line 119)
>>
>> ________________________
>>
>> I may be doing something completely wrong, and this might be something
>> that I should be able to figure out, but I am lost at the moment. Does anyone
>> have any suggestions?
>>
>> Thanks
>> Wil
|