Hello,
As well as opening the UCSF spectrum I would define the molecule (so that
Format Converter can try and match the codes below, although I'm not sure
if it will work with the ones below).
Anyway, what the problem is below that the Format Converter wants the
header line to be
Assignment w1 w2
So the first word needs to be capitalized but the other two need to be
lower case. (Not sure why all three ended up backwards for you!)
Wayne
On Wed, 26 Sep 2012, J. Dumont wrote:
> Dear all
> I am new to CCPN and I want to create a new project.
> I could manage to create a new project and open a .uscf format (1H 15N HSQC) spectrum.
> I have some troubles when I try to import file with peak assignments.
> I have already changed .txt by .peaks in the name of my file.
> When I use format converter --> peaks -->sparky and I import my file it doesn't run.
> The message on the console begins with: Unrecognized column headers : can't read sparky file
> and finshed by: attribute error: SparkyPeakFile instance has no attribute 'specNames'
>
> My file looks like
>
> assignment W1 W2
> K1N-H 0 0
> V2N-H 127.211 8.844
> X3N-H 127.731 8.861
> X4N-H 121.444 8.406
> X5N-H 126.073 8.522
> X6N-H 115.058 8.873
> E7N-H 124.623 8.13
> X8N-H 122.062 8.548
> A9N-H 123.214 8.404
> X10N-H 115.191 8.413
> T11N-H 118.823 7.829
> X12N-H 119.265 8.816
> K13N-H 119.505 8.196
> X14N-H 121.772 7.959
> L15N-H 117.149 7.505
> X16N-H 106.43 7.554
> M17N-H 114.251 7.426
> X18N-H 118.643 8.977
> G19N-H 119.557 9.06
> . . .
> . . .
> . . .
> . . .
> . . .
> Q126N-H 124.59 7.364
> G127N-H 0 0
> x128N-H 0 0
> G129N-H 0 0
> V130N-H 117.297 7.445
>
> Many thanks for your help
> Janice
>
> --
> Janice Dumont PhD student
> Enzymologie et Repliement des Protéines
> Centre d'Ingénierie des Protéines
> Institut de chimie B6c
> Université de Liège
> B-4000 Liège (Sart-Tilman)
> Belgium
> Tel : +32(0)4 3663504
> Fax : +32(0)4 3663364
>
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