Hello,
I am wishing to perform probx tracking from freesurfer cortical surfaces. Here is the link:
http://fsl.fmrib.ox.ac.uk/fsl/fdt/fdt_surface.html
Everything is running smoothly, until I want to concentate the freesurfer <> fa, and struct <> freesurfer transformations.
When I enter this command "convert_xfm -omat fa2freesurfer.mat -concat struct2freesurfer.mat fa2struct.mat " in Linux, it comes up with an error "Could not open matrix file struct2freesurfer.mat".
I can't find the struct2freesurfer.mat file. It has not been created when performing the transformations.
Could anyone help? I do have the file freesurfer2struct.mat, perhaps there is an error on the website?
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