Make sure you have enough disk space (or disk quota). My best guess
is that you filled it up, which would explain why
/work/imagingA/ADHD/images_SPM8_MID/images/1003TR_18102/SessionMIDtask/Series_006_MID_Task/swraDATA_0006.nii
does not seem to have been created.
Best regards,
-John
On 9 July 2012 00:52, Valentino Pironti <[log in to unmask]> wrote:
> Dear All,
> I have problems using the dartel tool - normalise to MNI. My EPI images are 3 3 3.75 voxel size. I have got 691 volumes but after normalization I get only 505 volumes. The same for all my subjects.
> To give you an idea, when I try check any volume after number 505, the error shows "the image cannot be resample". That is probably because the file have got only 505 volumes instead of 691. I do not know why this is happening.
> See:
> Running 'Check Registration'
>
> Image "/work/imagingA/ADHD/images_SPM8_MID/images/1003TR_18102/SessionMIDtask/Series_006_MID_Task/swraDATA_0006.nii" can not be resampled
> Failed 'Check Registration'
> Error using spm_sample_vol
> File too small.
> In file "/usr/local/spm8/spm_orthviews.m" (v4405), function "cm_pos" at line 2119.
> In file "/usr/local/spm8/spm_orthviews.m" (v4405), function "spm_orthviews" at line 329.
> In file "/usr/local/spm8/spm_orthviews.m" (v4405), function "addcontexts" at line 916.
> In file "/usr/local/spm8/spm_orthviews.m" (v4405), function "spm_orthviews" at line 463.
> In file "/usr/local/spm8/spm_check_registration.m" (v4330), function "spm_check_registration" at line 41.
> In file "/usr/local/spm8/config/spm_cfg_checkreg.m" (v4205), function "check_reg" at line 38.
>
> The following modules did not run:
> Failed: Check Registration
> Error using cfg_util (line 835)
> Error in spm_jobman (line 208)
> Error while evaluating uicontrol Callback
> -----------------------------------------------------------
>
> I repeated the normalisation few times. Nothing changed. I always end up with 505 volumes instead of 691.
>
> This is my batch:
>
> DARTEL Template: Template_6.nii
> Flow field: u rc1*_Template.nii
> Images: ra*.nii
> Voxel Size: 1.5 1.5 1.5
> Bounding box: 2x3 double
> Preserve Concentration
> Smoothing: 4 4 4
>
> Hoping you can give me some suggestions
> Looking forward to hearing from you
> Best
> Valentino
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