Hi
Depending on the question you want to ask, you may be able to use the centre of mass, or location of maximum from the seeds_to_target files instead of using the winner-take-all approach of find_the_biggest.
Cheers
Saad
On 8 Jul 2012, at 16:30, SUBSCRIBE FSL Trixy wrote:
> Hello,
>
> I´ve got problems in using the command "find_the_biggest". We try to subsegment the ventrolateral thalamus, but "find_the_biggest" seems to be unable to differentiate between the two inputs.
> My question: Is it possible to specify a threshold?
> Or does anybody know a better method?
>
> Thanks alot!
>
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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