Hi
If you are happy to extract values from the skeleton, then this is in the file stats/all_MD_skeletonised.
Otherwise, you would have to apply the warpfields yourself to the MD images.
These warpfields are in the FA directory, and you can apply them with "applywarp".
Saad
On 27 Jul 2012, at 18:25, ANONYMOUS wrote:
> Hello,
>
> We would like to extract signal values from each individual MD map.
> We ran TBSS_non_FA with MD images but we are not certain that we are getting the files that we need. We would like to get MD files that have been aligned to a target. For the FA files, these seem to be save as *FA_to_Target. Are similar files saved for non FA images when running TBSS_non_FA? If not, is there a way to save these files?
>
> Thank you for your help!
>
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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