Hi Christine,
Can you please elaborate what in the nifti is not read correctly by FSL,
as I'm sure that Mark Jenkinson would be interested in this if it is
indeed the case. If you have a properly specified nifti header, then
FSL will read it properly and there need not be any concern about R/L
flipping within the suite of FSL tools.
cheers,
-MH
On Mon, 2012-06-04 at 14:38 +0000, Christine Zakrzewski wrote:
> Just be careful, some information in the nifti header (sform, qform)
> created with afni programs, like to3d and dimon, will not be read in
> correctly by fsl--which could cause right/left flipping. I would
> reccomend using 3dclustsim to correct for multiple comparisons and
> clusterize in afni.
> Be careful.
> Christine
>
>
> > Date: Mon, 4 Jun 2012 15:49:05 +0200
> > From: [log in to unmask]
> > Subject: [FSL] using TFCE on tstat maps
> > To: [log in to unmask]
> >
> > Hi all,
> >
> > I received some tstat maps that were created in a higher-order
> analysis using AFNI. I would like to apply cluster-based thresholding,
> ideally using TFCE. Could anyone comment on the best way to go about
> this? I guess I should first convert to Zstat maps?
> >
> > Cheers,
> >
> > Diederick
>
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