Hi,
I have just installed the fsl today and wanted to use fslview, but the run crashed.
I am running on a MAC OS X 10.7.3,
Pls advise if i am missing something/can correct it.
Many thanks
Rotem
the crash repost was:
--------------------------
un 20 11:00:16 Rotem-Kopels-MacBook-Pro.local fslview[1069] <Error>: kCGErrorInvalidConnection: CGSGetWindowTags: Invalid connection
Jun 20 11:00:16 Rotem-Kopels-MacBook-Pro.local fslview[1069] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
when i tried the extended installation check i got the following info:
---------------------------------------------------------------------------------------
FSL Evaluation and Example Data Suite v4.1.9
Warning - FSL version (4.1.6) not the same as this test
suite version (4.1.9)! Therefore this test may
not run...maybe you should download the latest version of
the test suite and/or FSL.
start time = Wed Jun 20 01:04:38 CEST 2012
hostname = Rotem-Kopels-MacBook-Pro.local
os = Darwin Rotem-Kopels-MacBook-Pro.local 11.3.0 Darwin Kernel Version 11.3.0: Thu Jan 12 18:47:41 PST 2012; root:xnu-1699.24.23~1/RELEASE_X86_64 x86_64 i386
/bin/rm -rf /Users/rkopel/Downloads/feeds/results ; mkdir /Users/rkopel/Downloads/feeds/results
Starting PRELUDE & FUGUE at Wed Jun 20 01:04:39 CEST 2012
% error = 0.0
% error = 0.0
Starting SUSAN at Wed Jun 20 01:04:41 CEST 2012
% error = 0.03
Starting SIENAX (including testing BET and FLIRT and FAST) at Wed Jun 20 01:05:56 CEST 2012
checking error on BET:
% error = 0.0
checking error on FLIRT:
% error = 0.03
checking error on FAST:
checking error on single-image binary segmentation:
% error = 0.37
checking error on partial volume images:
% error = 0.28
% error = 0.41
% error = 0.29
checking error on SIENAX volume outputs:
% error = 0.24
% error = 0.1
% error = 0.55
% error = 0.07
% error = 0.63
Starting BET2 at Wed Jun 20 01:16:42 CEST 2012
checking error on T1 brain extraction:
% error = 0.0
checking error on skull and scalp surfaces:
% error = 0.09
% error = 0.25
% error = 0.25
Starting FEAT at Wed Jun 20 01:23:24 CEST 2012
checking error on filtered functional data:
% error = 0.13
checking error on raw Z stat images:
% error = 0.3
% error = 0.21
% error = 0.27
checking error on thresholded Z stat images:
% error = 0.39
% error = 0.34
% error = 0.37
checking error on registration images:
% error = 0.0
% error = 0.01
checking error on position of largest cluster of Talairached zfstat1:
% error = 12.0
Warning - test failed!
% error = 3.05
Warning - test failed!
% error = 7.47
Warning - test failed!
% error = 2.31
Warning - test failed!
can't read "R(10)": no such element in array
while executing
"simpleperror $D(8) $R(10) 500"
invoked from within
"if { $feeds(feat) } {
puts "\nStarting FEAT at [ exec date ]"
# fix FEAT setup file to use FEEDSDIR and FSLDIR
fsl:exec "cp ${FEEDSDIR}/data/fmri.fe..."
(file "./RUN" line 285)
1593.81 real 1449.54 user 38.71 sys
Rotem-Kopels-MacBook-Pro:feeds rkopel$
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