Hi Matthias,
> Importing the first peak/prot list usually works fine. When I import a second peak list (with a different prot list) some peaks have wrong assignments.
You have to load the second prot list before loading the peak list - XEASY assignments are by atom serial, so unless you first read in the prot file with the atom serials and connected atoms the assignments in the peak file can't be set correctly.
Bye,
Wim
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