You could use Laskowski's surfnet,
http://www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html
HTH,
Daniel
------------------------------
On Thu, May 31, 2012 3:59 PM ART Allan Pang wrote:
>A list that you might want to check if it is useful for you.
>
>http://www.caver.cz/index.php?sid=133
>
>Enjoy.
>
>Allan
>
>Quoting "Zhou, Tongqing (NIH/VRC) [E]" <[log in to unmask]>:
>
>> Dear All,
>>
>> I am looking for a way to calculate the size of a protein cavity which is occupied by a loop from a ligand protein. The goal is to see what's the maximum length of peptide allowed in this cavity.
>>
>> Thanks,
>>
>> Tongqing
>>
>> Tongqing Zhou, Ph.D.
>> Staff Scientist
>> Structural Biology Section
>> Vaccine Research Center, NIAID/NIH
>> Building 40, Room 4609B
>> 40 Convent Drive, MSC3027
>> Bethesda, MD 20892
>> (301) 594-8710 (Tel)
>> (301) 793-0794 (Cell)
>> (301) 480-2658 (Fax)
>> ******************************************************************************
>> The information in this e-mail and any of its attachments is confidential and may contain sensitive information. It should not be used by anyone who is not the original intended recipient. If you have received this e-mail in error please inform the sender and delete it from your mailbox or any other storage devices. National Institute of Allergy and Infectious Diseases shall not accept liability for any statements made that are sender's own and not expressly made on behalf of the NIAID by one of its representatives.
>> ******************************************************************
>>
>>
>
>
>
>--Allan Pang
>
>PhD Student
>
>G35 Joseph Priestley Building
>Queen Mary University of London
>London
>E1 4NS
>
>Phone number: 02078828480
>
>Twitter: @xerophytes
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