...I meant visualisation software of course...
Quoting "VAN RAAIJ , MARK JOHAN":
> if this is the first (or second, or third) time you do a DALI
> search, take the list output from DALI, start from the top and
> superpose each structure with yours and look at the superpositions
> with your favourite superposition software.
> This is very educational and the only way you get a feeling for what
> numbers mean.
>
>
> Quoting Jerry McCully:
>
>>
>> Dear ALL;
>>
>> After we solved our structure by anomalous scattering, we
>> did a DALI search. Here are the results but it is not easy to draw
>> meaningful conclusions whether our structure represents a novel
>> fold or is homologous to others.
>>
>> Basically the Z-score is between 2 and 6.4 since our
>> structure only contains 130 residues. Sequence identity is between
>> 5 to 15%.
>>
>> The RMSD of structural alignment is between 2.5 to 6 angstrom.
>>
>> Any suggests to interpret the DALI results? Many thanks,
>>
>> Jerry McCully
>>
>>
>>
>
>
>
> Mark J van Raaij
> Laboratorio M-4
> Dpto de Estructura de Macromoléculas
> Centro Nacional de Biotecnología - CSIC
> c/Darwin 3, Campus Cantoblanco
> 28049 Madrid
> tel. 91 585 4616
> email: [log in to unmask]
>
Mark J van Raaij
Laboratorio M-4
Dpto de Estructura de Macromoléculas
Centro Nacional de Biotecnología - CSIC
c/Darwin 3, Campus Cantoblanco
28049 Madrid
tel. 91 585 4616
email: [log in to unmask]
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