Hi all,
I ran probtrackx from the command line. It seems to have ran fine, but I cannot find where it output some of the files.
there is a 'logdir' directory made in the subjects' directory but it only contains the probtrackx log and the waytotal text file. Where does it put the rest of the stuff (niftiis etc.)?
Below is the command I ran:
# run Probtrackx
probtrackx --network -s /Volumes/Andrew_HDD/City_fMRI_fsl/${i}/dti/bedpostx.bedpostX/merged -m /Volumes/Andrew_HDD/City_fMRI_fsl/${i}/dti/bedpostx.bedpostX/nodif_brain_mask -x /Volumes/Andrew_HDD/City_fMRI_fsl/fsl_roi_refs/temp_${j}
Thanks!
Best,
Andrew
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