Hi Gao,
in case Marko's solution doesn't work for you, here's another
workaround... ;-) :
You could use the xjview toolbox (http://www.alivelearn.net/xjview8/) to
threshold the T-maps (or whatever maps you have) and then save the
thresholded image which you can display in MRIcron. You might have to
convert it from *.img to *.nii, but that's a quick step (in case you are
not familiar with it), especially if you use the batch editor.
Good luck,
Franziska
On 4/16/2012 11:51 AM, Marko Wilke wrote:
> Hi Gao,
>
> I only saw this today myself, so don't know how well it works, but you
> can try Draw, Advanced, Apply Cluster Threshold. You may then have to
> load the background image as an overlay, but hey ;) Otherwise, you can
> of course manipulate your image using spm_bwlabel and then use that
> "cleaned" result for overlays.
>
> Cheers,
> Marko
>
>
> Gao wrote:
>> Sorry if this is not very relevant to SPM.
>> But anyone here know if it's possible to set a minimum cluster size
>> (# of
>> voxels) for overlays in MRIcron?
>> This was possible in MRIcro, yet I can't seem to find a similarly
>> functioning button (or command line reference) for it in MRIcron.
>> Thanks in Advance!
>> Gao
>>
>
--
Franziska M. Korb, Ph.D.
Postdoctoral Associate (Egner Lab)
Center for Cognitive Neuroscience
LSRC Building, Room C03D, Research Dr
Box 90999
Duke University
Durham, NC 27708
phone: ++1-919-684.1034
http://sites.google.com/site/egnerlab/
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