Hi Colleen,
Could you provide me with some more information?
(1) Did you download it from
http://sourceforge.net/news/?group_id=145098 or from
http://www.fil.ion.ucl.ac.uk/~smoham/?
(2) Could you tell me which options you used (single-contrast or
multi-contrast registration)?
(3) Did the toolbox produce some files/images before it crashed? Could
you sent me a screen shot of the files within the folder where the FA,
b0 etc images were?
Best,
Siawoosh
Hanlon, Colleen A. wrote:
>
> Hi,
>
> I just downloaded the DTI normalization toolbox (FA-VBS normalization
> toolbox for SPM8, Version 2.0, 28 July 2011) and am encountering some
> problems with the batch script. I believe that I have it installed
> correctly, to the MATLAB toolbox directory. I have specified my FA
> maps, MD maps, and B0 images. When I execute the batch (60
> participants) it fails fairly quickly (see error message below). It
> doesn’t fail on the first file, or even the second file, but it is
> seemingly random participant files. I have tried removing the files
> that are causing problems, but there doesn’t seem to be anything
> unique about the files that fail.
>
> Do you all have any experience or insight on this problem?
>
> Thank you very much,
>
> Colleen
>
> The message is:
>
> /Iteration: 1 /
>
> /Step 1: Running FA-NormalisationFailed 'FAVBS Normalisation' /
>
> /Error using ==> read_hdr at 62 /
>
> /Bad vox_offset (0) for "D:\Hanlon
> Lab\DTI\DTI_16volumes_allsubs\B0\*DTI_1065_01.img.* /
>
> /In file "C:\Program
> Files\MATLAB\toolbox\spm8\@nifti\private\read_hdr.m" (v1143), function
> "read_hdr" at line 62. /
>
> /In file "C:\Program Files\MATLAB\toolbox\spm8\@nifti\nifti.m"
> (v4270), function "nifti" at line 27. /
>
> /In file "C:\Program Files\MATLAB\toolbox\spm8\spm_vol_nifti.m"
> (v1143), function "spm_vol_nifti" at line 16. /
>
> /In file "C:\Program Files\MATLAB\toolbox\spm8\spm_vol.m" (v4045),
> function "subfunc" at line 124. /
>
> /In file "C:\Program Files\MATLAB\toolbox\spm8\spm_vol.m" (v4045),
> function "subfunc1" at line 77. /
>
> /In file "C:\Program Files\MATLAB\toolbox\spm8\spm_vol.m" (v4045),
> function "subfunc2" at line 69. /
>
> /In file "C:\Program Files\MATLAB\toolbox\spm8\spm_vol.m" (v4045),
> function "spm_vol" at line 54. /
>
> /In file "C:\Program
> Files\MATLAB\toolbox\FAVBS_normalisation_toolbox\cfg_run_favbs_create_template.m"
> (???), function "cfg_run_favbs_create_template" at line 69. /
>
> /In file "C:\Program
> Files\MATLAB\toolbox\FAVBS_normalisation_toolbox\tbxdti_run_favbs_norm.m"
> (???), function "tbxdti_run_favbs_norm" at line 73. /
>
> /In file "C:\Program
> Files\MATLAB\toolbox\FAVBS_normalisation_toolbox\tbxdti_cfg_favbs_norm.m"
> (???), function "@(job)tbxdti_run_favbs_norm('run',job)" at line 203. /
>
> / /
>
> /The following modules did not run: /
>
> /Failed: FAVBS Normalisation /
>
> *Colleen A. Hanlon, Ph.D. *
>
> Assistant Professor
>
> Departments of Psychiatry and Neurosciences
>
> Center for Advanced Imaging Research
>
> Medical University of South Carolina
>
> (843)792-5732, (843)792-7457 fax
>
> [log in to unmask]
>
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