Dear Marc,
It looks like you are running BET on a computed image (based on the look
and the noise around the edge). You should run it on your T1w structural
or the b=0 (no diffusion) image, and then apply this mask to other images
registered to those spaces.
All the best,
Mark
On 14 Apr 2012, at 22:25, Marc Dubin wrote:
> <Screen Shot 2012-04-14 at 11.20.06 PM.png>
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