Hi - You should use the second one but without the ".msf"
On 27 Mar 2012, at 21:27, Xu Chen wrote:
> Dear FSLers
> I am trying to spatially normalize the first eigenvector (V1) to a standard space using "vecreg". After the TBSS analysis, for each subject, there are two transforms, data(N)_to_target.mat (initial guess of FLIRT) & data(N)_to_target_warp.msf (results of FNIRT). Should I apply both in "vecreg" with the command line like
> " vecreg -i data(N)_V1 -o data(N)_V1_norm -r target -t data(N)_to_target.mat -w data(N)_to_target_warp.msf "
> or only apply *warp.msf as in
> " vecreg -i data(N)_V1 -o data(N)_V1_norm -r target -w data(N)_to_target_warp.msf "
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