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Subject:

Re: ipap_ass.py macro

From:

Wayne Boucher <[log in to unmask]>

Reply-To:

CcpNmr software mailing list <[log in to unmask]>

Date:

Thu, 15 Mar 2012 19:09:30 +0000

Content-Type:

TEXT/PLAIN

Parts/Attachments:

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TEXT/PLAIN (101 lines)

Whoops, but I see that Pryank asked about the ipap_ass macro in July 2009 
but nobody responded so I guess it was not updated, which is a bummer.

Wayne

On Thu, 15 Mar 2012, Rasmus Fogh wrote:

> Dear All,
>
> Different macro - this is RDCcalculator, not ipap_ass. But if somebody fixes 
> the ipap_ass macro I will fix the download.
>
> Rasmus
>
> ---------------------------------------------------------------------------
> Dr. Rasmus H. Fogh                  Email: [log in to unmask]
> Dept. of Biochemistry, University of Cambridge,
> 80 Tennis Court Road, Cambridge CB2 1GA, UK.     FAX (01223)766002
>
> On Thu, 15 Mar 2012, Wayne Boucher wrote:
>
>> Hello,
>> 
>> Ben Goult modified it to be v2 compliant, see here:
>> 
>> https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0909&L=ccpnmr&P=R10212&1=ccpnmr&9=A&J=on&d=No+Match%3BMatch%3BMatches&z=4
>> 
>> (or equivalently http://tinyurl.com/7wfa8es).
>> 
>> Wayne
>> 
>> On Thu, 15 Mar 2012, Rasmus Fogh wrote:
>> 
>>> Dear Krisztina,
>>> 
>>> Yes, it has to do with changes in the data model. This macro is old.
>>> 
>>> The problem is that the data model used to return lists in many places 
>>> where it now returns (frozen) sets.
>>> 
>>> The solution, in this case, is to to change line 31 from
>>>    srcPeakDims = source.peakDims
>>> to
>>>    srcPeakDims = source.sortedPeakDims()
>>> 
>>> You need to make a similar change in line 33, and quite possibly in other 
>>> places as well.
>>> 
>>> Unfortunately we do not have time to go though contributed software and 
>>> make fixes. If you should decide to upgrade these macros so they work, and 
>>> if you then send them to us, we shall put the new versions in place and 
>>> credit you with the upgrade.
>>> 
>>> Best I can do, I am afraid,
>>> 
>>> Rasmus
>>>
>>> 
>>> ---------------------------------------------------------------------------
>>> Dr. Rasmus H. Fogh                  Email: [log in to unmask]
>>> Dept. of Biochemistry, University of Cambridge,
>>> 80 Tennis Court Road, Cambridge CB2 1GA, UK.     FAX (01223)766002
>>> 
>>> On Thu, 15 Mar 2012, Krisztina Feher wrote:
>>> 
>>>> Dear All,
>>>> 
>>>> I am trying to get to work Graeme Ball's macro for RDC peak assignment 
>>>> transfer, ipap_ass.py. I selected one HSQC peak in the assigned spectrum 
>>>> and 2 peaks in the destination spectrum. I got the following traceback:
>>>> 
>>>>>>> Exception in Tkinter callback
>>>> Traceback (most recent call last):
>>>>  File 
>>>> "/home/kriszti/bin/ccpnmr/python2.6/lib/python2.6/lib-tk/Tkinter.py", 
>>>> line 1410, in __call__
>>>>    return self.func(*args)
>>>>  File 
>>>> "/home/kriszti/bin/ccpnmr/ccpnmr2.1/python/ccpnmr/analysis/popups/EditProfiles.py", 
>>>> line 983, in runSelectedMacro
>>>>    runMacro(self.macro,self.parent.argumentServer)
>>>>  File 
>>>> "/home/kriszti/bin/ccpnmr/ccpnmr2.1/python/ccpnmr/analysis/core/Util.py", 
>>>> line 1471, in runMacro
>>>>    command.run()
>>>>  File "/home/kriszti/bin/ccpnmr/ccpnmr2.1/python/ccp/general/Command.py", 
>>>> line 83, in run
>>>>    self.func(argServer=self.argumentServer)
>>>>  File "/home/kriszti/Desktop/gball-mar06-rdc-macros/ipap_ass2.py", line 
>>>> 35, in ipap_ass
>>>>    for contrib in srcPeakDims[i].peakDimContribs:
>>>> TypeError: 'frozenset' object does not support indexing
>>>> 
>>>> Any ideas? Does it has to do with some changes in Analysis in the mean 
>>>> time?
>>>> Thanks,
>>>> Krisztina
>>>> 
>>> 
>> 
>

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