Oh, that's bad news. Could you try the following, on the command line type:
strace $FSLDIR/bin/fslview_bin
Send me the result .There'll be reams of output but we might be able to determine what the trouble is.
On 2 Feb 2012, at 06:28, Neil Killeen wrote:
> Hi Dave
>
> thanks for that information (I won't explain what I thought they were not supplied!).
>
> Now, I have made a binary install with fsl_installer.sh
>
> The fsl guy itself runs ok, and feeds runs ok, but fslview crashes with a segv :-(
>
>
> I se the GUI briefly in this process.
>
> I put some print statements inside the fslview script so you can see
> LD_LIBRARY_PATH and ldd on the fslview_bin binary:
>
>
>
> [nkilleen@edward bin]$ ./fslview
> FSLDIR= /home/nkilleen/Software/FSL/Binary_Distribution/fsl
> LDD= /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib:
> linux-vdso.so.1 => (0x00007fffd4dff000)
> libqt-mt.so.3 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libqt-mt.so.3 (0x000000368fa00000)
> libSM.so.6 => /usr/lib64/libSM.so.6 (0x00000032b4800000)
> libICE.so.6 => /usr/lib64/libICE.so.6 (0x00000032b2800000)
> libX11.so.6 => /usr/lib64/libX11.so.6 (0x0000003cab600000)
> libXext.so.6 => /usr/lib64/libXext.so.6 (0x0000003cac600000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000003ca8200000)
> libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003ca8600000)
> libz.so.1 => /lib64/libz.so.1 (0x0000003ca9200000)
> libqwt.so.4 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libqwt.so.4 (0x00007f73b36b8000)
> libvtkHybrid.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkHybrid.so.5.0 (0x00007f73b3410000)
> libvtkWidgets.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkWidgets.so.5.0 (0x000000368ec00000)
> libQVTK.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libQVTK.so.5.0 (0x00007f73b32f5000)
> libvtkexoIIc.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkexoIIc.so.5.0 (0x0000003691700000)
> libvtkNetCDF.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkNetCDF.so.5.0 (0x000000368f600000)
> libvtkRendering.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkRendering.so.5.0 (0x000000368f200000)
> libvtkIO.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkIO.so.5.0 (0x0000003692500000)
> libvtkDICOMParser.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkDICOMParser.so.5.0 (0x0000003690400000)
> libpng12.so.0 => /usr/lib64/libpng12.so.0 (0x0000003caaa00000)
> libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x00000032b4c00000)
> libtiff.so.3 => /usr/lib64/libtiff.so.3 (0x00000032b5800000)
> libexpat.so.0 => /usr/lib64/libexpat.so.0 (0x00007f73b30ca000)
> libvtkftgl.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkftgl.so.5.0 (0x00007f73b2fbf000)
> libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x00000032af400000)
> libGL.so.1 => /usr/lib64/libGL.so.1 (0x00007f73b2d4b000)
> libXt.so.6 => /usr/lib64/libXt.so.6 (0x00000032b0800000)
> libvtkGraphics.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkGraphics.so.5.0 (0x0000003690d00000)
> libvtkImaging.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkImaging.so.5.0 (0x0000003690600000)
> libvtkFiltering.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkFiltering.so.5.0 (0x00007f73b29e9000)
> libvtkCommon.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtkCommon.so.5.0 (0x0000003691400000)
> libvtksys.so.5.0 => /home/nkilleen/Software/FSL/Binary_Distribution/fsl/lib/libvtksys.so.5.0 (0x000000368e400000)
> libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00007f73b26e2000)
> libm.so.6 => /lib64/libm.so.6 (0x0000003ca8a00000)
> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003ca9a00000)
> libc.so.6 => /lib64/libc.so.6 (0x0000003ca7e00000)
> libmng.so.1 => /usr/lib64/libmng.so.1 (0x00007f73b246d000)
> libXrender.so.1 => /usr/lib64/libXrender.so.1 (0x0000003cabe00000)
> libXrandr.so.2 => /usr/lib64/libXrandr.so.2 (0x0000003cb0a00000)
> libXcursor.so.1 => /usr/lib64/libXcursor.so.1 (0x0000003cade00000)
> libXinerama.so.1 => /usr/lib64/libXinerama.so.1 (0x0000003caea00000)
> libXft.so.2 => /usr/lib64/libXft.so.2 (0x00000032b4400000)
> libfontconfig.so.1 => /usr/lib64/libfontconfig.so.1 (0x00000032b0400000)
> libuuid.so.1 => /lib64/libuuid.so.1 (0x00000032b4000000)
> libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x0000003caba00000)
> /lib64/ld-linux-x86-64.so.2 (0x0000003ca7a00000)
> libXdamage.so.1 => /usr/lib64/libXdamage.so.1 (0x0000003caf200000)
> libXfixes.so.3 => /usr/lib64/libXfixes.so.3 (0x0000003cb0600000)
> libXxf86vm.so.1 => /usr/lib64/libXxf86vm.so.1 (0x00007f73b2264000)
> libdrm.so.2 => /usr/lib64/libdrm.so.2 (0x00007f73b2059000)
> liblcms.so.1 => /usr/lib64/liblcms.so.1 (0x00007f73b1e20000)
> libexpat.so.1 => /lib64/libexpat.so.1 (0x0000003cace00000)
> libXau.so.6 => /usr/lib64/libXau.so.6 (0x0000003cab200000)
> librt.so.1 => /lib64/librt.so.1 (0x0000003ca9600000)
> ./fslview: line 8: 29085 Segmentation fault ${FSLDIR}/bin/fslview_bin $@
>
>
> The system is running Scientific Linux release 6.1
>
> $ uname -a
> Linux edward 2.6.32-220.4.1.el6.x86_64 #1 SMP Mon Jan 23 17:20:44 CST 2012 x86_64 x86_64 x86_64 GNU/Linux
>
> and
>
> $ cat/proc/cpuinfo
> processor : 0
> vendor_id : GenuineIntel
> cpu family : 6
> model : 44
> model name : Intel(R) Xeon(R) CPU X5680 @ 3.33GHz
> stepping : 2
> cpu MHz : 3333.596
> cache size : 12288 KB
> fpu : yes
> fpu_exception : yes
> cpuid level : 11
> wp : yes
> flags : fpu de tsc msr pae cx8 cmov pat clflush mmx fxsr sse sse2 ss ht syscall nx lm rep_good aperfmperf unfair_spinlock pni pclmulqdq ssse3 cx16 sse4_1 sse4_2 popcnt aes hypervisor lahf_lm ida arat epb dts
> bogomips : 6667.19
> clflush size : 64
> cache_alignment : 64
> address sizes : 40 bits physical, 48 bits virtual
> power management:
>
>
>
>
> I'd really like to avoid building FSLVIEW from scratch :-)
>
> cheers
> Neil
>
--
Dave Flitney, IT Manager
Oxford Centre for Functional MRI of the Brain
E:[log in to unmask] W:+44-1865-222713 F:+44-1865-222717
URL: http://www.fmrib.ox.ac.uk/~flitney
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