I use pdbeditor from sourceforge for editing pdb files. It can do a great variety of editing
tasks painlessly. It is very intuitive and can be used without reading the manual.
java binary at http://sourceforge.net/projects/pdbeditorjl/
manual at http://voxel.dl.sourceforge.net/project/pdbeditorjl/Manual/manual/PDBEditorManual.pdf
I stored the binary in my /Applications directory.
I made an alias to enable running the program anywhere on my computer.
alias pdbed='java -jar /Applications/PDB_Editor_FIX090203.jar'
I use it by typing the following command "pdbed filename.pdb".
**********************************************************
Blaine Mooers, Ph.D.
Assistant Professor
Department of Biochemistry and Molecular Biology
University of Oklahoma Health Sciences Center
S.L. Young Biomedical Research Center Rm. 466
Letter address: Shipping address:
P.O. Box 26901, BRC 466 975 NE 10th Street, BRC 466
Oklahoma City, OK 73190 Oklahoma City, OK 73104-5419
office: (405) 271-8300 lab: (405) 271-8313 fax: (405) 271-3910
e-mail: [log in to unmask]
http://www.oumedicine.com/body.cfm?id=3877&oTopID=3877
________________________________________
From: CCP4 bulletin board [[log in to unmask]] On Behalf Of Dialing Pretty [[log in to unmask]]
Sent: Tuesday, January 03, 2012 6:22 AM
To: [log in to unmask]
Subject: [ccp4bb] a PDB tool
Dear All,
I have a PDB file starting from residue 1 to 100 for example, can you introduce me a server so that I can convert it to another PDB file starting from 200 to 300?
Cheers,
Dialing
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