Hi,
I am writing a script that relies on calling several spm functions directly. pm_segment has proven difficult to get to work properly. In particular, I'm having difficulty making it do the same work as a regular run of the segment module in the gui. Any direct call to the function gives me a very poor output (.nii files) and no .mat files that can be used later during normalization. Judging from the graphics reporting the progress it seems like the segment module does a couple of things before running the segmentation function. Any help on how to best make this work without relying on a batch would be greatly appreciated.
Thanks in advance.
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Christian A. Rodriguez
Graduate Student
Decision Neuroscience Lab
Department of Psychology
Stanford University
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