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Subject:

Re: How to save the calculated img and hdr files

From:

"S.F.W. Neggers" <[log in to unmask]>

Reply-To:

S.F.W. Neggers

Date:

Wed, 23 Nov 2011 11:47:15 +0100

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (87 lines)

what is 'Res'? It should be a string with full path to the image
(i.e.,something like Res='/home/ce/data/mydata.img'). Then you will find
your image in that folder.

Without a path I guess your image will end up in your current folder,
but i am not sure about that.

Also make sure the scaling is not off when using spm_write_vol. In your
Vo handle, this is implicitely stored as the optimal intensity scaling
for your previous image, which might not be good for your new data.

Otherwise your code looks good to me.


Good luck,

Bas

Op 23-11-11 11:53, Ce Mo schreef:
>
> Dear all,
>
> I have been trying to write a code to perform some calculation on two
> beta imgs, but I don't know how to save the result/calculated img.
>
> I called the function spm_write_vol as:
>
>
> out = sc.*me; % target
> Vo = spm_vol(char(Canonical));% For simplicity, apply the input elements
> Vo.fname = Res; % change name
> Vo = spm_write_vol(Vo,out); % Write output img
>
> where out is the calculated img.
>
> After that, Vo was saved in workspace but I could not save the out.img
> or out.hdr in the current folder or anywhere.
>
> Any ideas and comments would be greatly appreciated.
>
> Many thanks and best regards,
>
> Ce
>


--
--------------------------------------------------
Dr. S.F.W. Neggers
Division of Brain Research
Rudolf Magnus Institute for Neuroscience
Utrecht University Medical Center

Visiting : Heidelberglaan 100, 3584 CX Utrecht
            Room B.01.1.03
Mail     : Huispost B01.206, P.O. Box 85500
            3508 GA Utrecht, the Netherlands
Tel      : +31 (0)88 7559609
Fax      : +31 (0)88 7555443
E-mail   : [log in to unmask]
Web      : http://www.neuromri.nl/people/bas-neggers
          : http://www.neuralnavigator.com (CEO)
--------------------------------------------------


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