Hi,
maybe an obvious thing, but did you install "fsl-atlases"?
Which repositories are you using? I recommend the "neurodebian" ones
(neuro.debian.net).
Cheers
Cornelius
On Tue, Nov 15, 2011 at 8:32 PM, Olga Grigorieva <[log in to unmask]> wrote:
> Dear FSL support tech:
> I am installing FSL on Ubuntu (lucid, 10.04.03, amd 64), and I have run into
> a problem. I have used synaptic in order to install fsl, fsl-doc, fslview
> and fslview-doc. Both programs do run, the GUI opens up and I can view my
> images. However, when I try to use flirt or fnirt, when the standard image
> is needed, the process the following error appears:
> ** ERROR (nifti_image_read): failed to find header file for
> '/usr/share/fsl/data/standard/MNI152_T1_2mm_brain'
> ** ERROR:
> nifti_image_open(/usr/share/fsl/data/standard/MNI152_T1_2mm_brain): bad
> header info
> Error: failed to open file /usr/share/fsl/data/standard/MNI152_T1_2mm_brain
> ERROR: Could not open image /usr/share/fsl/data/standard/MNI152_T1_2mm_brain
> Image Exception : #22 :: Failed to read volume
> /usr/share/fsl/data/standard/MNI152_T1_2mm_brain
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> Aborted
> Finished
> I have searched the whole computer for the standard MNI template files, and
> those could not be found anywhere.
> I have also downloaded FEEDS and started the ./RUN all process. However, it
> was taking too long (I left it running overnight, the process has run for
>>1279 minutes). So, there is no output from FEEDS.
> Please, help to resolve this issue.
> All my best,
> Olga Grigorieva
> PhD graduate student
> Department of Biophysics
> The Ohio State University
> [log in to unmask]
>
--
Cornelius Werner
cornelius.werner<at>gmail.com
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