Rajesh
I use adxv (as well as xemacs, xdsview, imosflm, hklview, ipdisp etc)
over ssh/Cygwin X11 from Windows XP to a Centos (like RedHat) server
with no problems at all.
I suspect your xming either just doesn't have the requisite X11 libs
or somehow they have not gotten installed on your system. Can you try
Cygwin/X11, it's very easy to install.
Cheers
-- Ian
On 22 November 2011 13:49, Rajesh kumar <[log in to unmask]> wrote:
> Dear Tim,
> Yes, I have windows 7 computer and use ccp4 and phenix through xming/putty
> and I run them over linux lab computer.
> Sorry if I have confused you all with insufficient information.
> On the lab linux system, I installed everything you suggested in BASH and
> it works but not completely.
> Core manager kind of not interested to look in to it and I dont know much to
> understand everything you nice people saying here.
> So instead I used idiffdisp and it opens the image. But wanted adxv to work
> thats all.
> Thanks
> Raj
>> Date: Tue, 22 Nov 2011 14:41:00 +0100
>> From: [log in to unmask]
>> To: [log in to unmask]
>> CC: [log in to unmask]
>> Subject: Re: [ccp4bb] adxv
>>
>> -----BEGIN PGP SIGNED MESSAGE-----
>> Hash: SHA1
>>
>> Dear Rajesh,
>>
>> are you saying that the computer you are sitting in front of is a
>> windows computer?
>> Are you sure you have been using CCP4 and phenix through an
>> ssh-connection and not the respective windows-binaries?
>>
>> I am not familiar with windows and the possible existence of
>> X11-clients, but I would think that most suggestions to you assumed that
>> your client computer was also a linux-machine.
>>
>> Cheers,
>> Tim
>>
>> On 11/22/2011 02:27 PM, Rajesh kumar wrote:
>> >
>> > I don't know if I need that installed on my windows computer terminal.On
>> > the server also I could run adxv. Thought of using other ccp4 utilities.
>> > Thanks for everyone for the help. I give up.
>> > Regards,Rajesh
>> >
>> >> Date: Mon, 21 Nov 2011 11:36:14 -0500
>> >> From: [log in to unmask]
>> >> Subject: Re: [ccp4bb] adxv
>> >> To: [log in to unmask]
>> >>
>> >> yum install lesstif ?
>> >>
>> >> but wouldn't the motif stuff be required for the X-server, i.e. your
>> >> terminal, not for the
>> >> server running adxv?
>> >>
>> >> Rajesh kumar wrote:
>> >>> Dear Mark,
>> >>>
>> >>> $ locate XKeysymDB - didnt come with any thing suggests probably
>> >>> openmotif lib is not
>> >>> installed.
>> >>> I linux server has Fedora and I am using latest version of Adxv so
>> >>> details on the sbgrid
>> >>> suggest its same problem.
>> >>>
>> >>> So how would I fix this.
>> >>>
>> >>> Thanks for your time.
>> >>>
>> >>> Regards
>> >>> Rajesh
>> >>>
>> >>>
>> >>> > Date: Sun, 20 Nov 2011 23:18:32 +0000
>> >>> > Subject: Re: [ccp4bb] adxv
>> >>> > From: [log in to unmask]
>> >>> > To: [log in to unmask]
>> >>> > CC: [log in to unmask]
>> >>> >
>> >>> > Dear Rajesh,
>> >>> > Are you using the Openmotif library? If so, do you
>> >>> > have an XKeysymDB file installed?
>> >>> > In as shell, issue:
>> >>> > $ locate XKeysymDB
>> >>> > You may need to symlink it to /usr/X11R6/lib/X11/XKeysymDB if it is
>> >>> > elsewhere [1].
>> >>> > I suspect you're not the only one to have seen this [2].
>> >>> >
>> >>> > I hope this helps.
>> >>> >
>> >>> > Mark
>> >>> > [1]
>> >>>
>> >>> ftp://ftp.parallelgeo.com/SPW_Products/Linux/Current_Release/ReadMe_for_recent_Linux_distributions.txt
>> >>> > [2] http://sbgrid.org/news/newsletters/2009/06 (search for the
>> >>> > string "adxv")
>> >>> >
>> >>> >
>> >>> > On 20 November 2011 19:45, Rajesh kumar <[log in to unmask]> wrote:
>> >>> > >
>> >>> > > Dear Tim,
>> >>> > > Thanks. Your suggestion of adding to PATH works and its not
>> >>> > > completely functional may
>> >>> be due to the Ximg/ssh or some thing to do with display.
>> >>> > > All three windows opened but couldn't open any image as it didn't
>> >>> > > display in the list
>> >>> of autoload window. Pattern shows *.0.
>> >>> > >
>> >>> > > $adxv pin8_1_180.img
>> >>> > >
>> >>> > > (standard_in) 1: parse error
>> >>> > > (standard_in) 1: parse error
>> >>> > > (standard_in) 1: parse error
>> >>> > > beam_center x = pixels , mm
>> >>> > > beam_center y = pixels , mm
>> >>> > > distance = mm
>> >>> > > overload = counts
>> >>> > > pixelsize = 0.172 mm
>> >>> > > wavelength = Angstroem
>> >>> > > Adxv Version 1.9.4-beta
>> >>> > > Copyright (C) 1994-2007 by Andrew Arvai, Area Detector Systems
>> >>> > > Corporation
>> >>> > > Using 24-bit TrueColor visual
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > ManagerParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfBeginLine
>> >>> > > Warning: ... found while parsing ':<Key>osfBeginLine:
>> >>> > > ManagerGadgetTraverseHome()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfHelp
>> >>> > > Warning: ... found while parsing ':<Key>osfHelp:
>> >>> > > ManagerGadgetHelp()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > ManagerParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > PrimitiveParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfHelp
>> >>> > > Warning: ... found while parsing ':<Key>osfHelp: Help()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > PrimitiveParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfCancel
>> >>> > > Warning: ... found while parsing ':<Key>osfCancel: MenuEscape()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfSelect
>> >>> > > Warning: ... found while parsing ':<Key>osfSelect:
>> >>> > > ArmAndActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > PrimitiveParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: Locale not supported for XmbTextListToTextProperty
>> >>> > > Warning: Cannot convert XmString to compound text
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfPrimaryPaste
>> >>> > > Warning: ... found while parsing ':m
>> >>> > > <Key>osfPrimaryPaste:cut-primary()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > PrimitiveParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > PrimitiveParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfSelect
>> >>> > > Warning: ... found while parsing ':<Key>osfSelect:
>> >>> > > ArmAndActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfPrimaryPaste
>> >>> > > Warning: ... found while parsing ':m
>> >>> > > <Key>osfPrimaryPaste:cut-primary()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfSelect
>> >>> > > Warning: ... found while parsing ':<Key>osfSelect:
>> >>> > > ManagerGadgetSelect()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfSelect
>> >>> > > Warning: ... found while parsing ':<Key>osfSelect:
>> >>> > > MenuBarGadgetSelect()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > ManagerParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfHelp
>> >>> > > Warning: ... found while parsing ':<Key>osfHelp: MenuHelp()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > PrimitiveParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfActivate
>> >>> > > Warning: ... found while parsing ':<Key>osfActivate:
>> >>> > > DrawingAreaInput()
>> >>> ManagerParentActivate()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfUp
>> >>> > > Warning: ... found while parsing ':<Key>osfUp: DrawingAreaInput()
>> >>> ManagerGadgetTraverseUp()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfSelect
>> >>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfSelect
>> >>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfCancel
>> >>> > > Warning: ... found while parsing '<Key>osfCancel: MenuEscape()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfBeginLine
>> >>> > > Warning: ... found while parsing ':s c <Key>osfBeginLine:
>> >>> > > ListBeginDataExtend()'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: translation table syntax error: Unknown keysym name:
>> >>> > > osfBeginLine
>> >>> > > Warning: ... found while parsing ':c <Key>osfBeginLine:
>> >>> > > ActionGrab(SWTopLine)'
>> >>> > > Warning: String to TranslationTable conversion encountered errors
>> >>> > > Warning: Locale not supported for XmbTextListToTextProperty
>> >>> > > Warning: Cannot convert XmString to compound text
>> >>> > > Warning: Locale not supported for XmbTextListToTextProperty
>> >>> > > Warning: Cannot convert XmString to compound text
>> >>> > > No such file: 0.172
>> >>> > >
>> >>> > > > Date: Sat, 19 Nov 2011 22:27:25 +0100
>> >>> > > > From: [log in to unmask]
>> >>> > > > To: [log in to unmask]
>> >>> > > > CC: [log in to unmask]
>> >>> > > > Subject: Re: [ccp4bb] adxv
>> >>> > > >
>> >>> > > > -----BEGIN PGP SIGNED MESSAGE-----
>> >>> > > > Hash: SHA1
>> >>> > > >
>> >>> > > > Dear Raj,
>> >>> > > >
>> >>> > > > your first two error messages are because your 'current working
>> >>> > > > directory' is not part of your bash's PATH variable. As you
>> >>> > > > login, type
>> >>> > > > export PATH=$PATH:/full/path/to/your/work/adxv
>> >>> > > > then run adxv.
>> >>> > > >
>> >>> > > > I am not sure whether this will prevent the last error to occur,
>> >>> > > > but
>> >>> > > > since you can run other graphical programs there is a fair
>> >>> > > > chance.
>> >>> > > >
>> >>> > > > Cheers,
>> >>> > > > Tim
>> >>> > > >
>> >>> > > > On 11/19/2011 05:53 PM, Rajesh kumar wrote:
>> >>> > > > >
>> >>> > > > > Dear All,
>> >>> > > > >
>> >>> > > > > I have connected to unix server of the lab through
>> >>> > > > > ssh/xming/x11. I can run open
>> >>> phenix and CCP4 GUI.
>> >>> > > > >
>> >>> > > > > I am trying to adxv to see images but I am unable to do so.
>> >>> > > > >
>> >>> > > > > I have got two files adxv and adxv.i686FC2 sitting in my
>> >>> > > > > work/adxv/.
>> >>> > > > >
>> >>> > > > > when i run adxv in bash
>> >>> > > > > bash: adxv: command not found
>> >>> > > > >
>> >>> > > > >
>> >>> > > > >
>> >>> > > > > when i run ./adxv in bash
>> >>> > > > > $ ./adxv /home/raj/work/wen/pin8/pin8_1_001.img
>> >>> > > > > (standard_in) 1: parse error
>> >>> > > > > (standard_in) 1: parse error
>> >>> > > > > (standard_in) 1: parse error
>> >>> > > > > beam_center x = pixels , mm
>> >>> > > > > beam_center y = pixels , mm
>> >>> > > > > distance = mm
>> >>> > > > > overload = counts
>> >>> > > > > pixelsize = 0.172 mm
>> >>> > > > > wavelength = Angstroem
>> >>> > > > >
>> >>> > > > > ./adxv: line 39: adxv.i686FC2_static: command not found
>> >>> > > > >
>> >>> > > > > when i do
>> >>> > > > > $ ./adxv.i686FC2_static /home/raj/work/wen/pin8/pin8_1_001.img
>> >>> > > > >
>> >>> > > > > -X11TransSocketINETConnect() cnat get address for
>> >>> > > > > loaclhost:6011: name or service
>> >>> not known
>> >>> > > > > error: cannot open display
>> >>> > > > >
>> >>> > > > > I cant use Nxclient.
>> >>> > > > >
>> >>> > > > > Thanks
>> >>> > > > > Raj
>> >>> > > > >
>> >>> > > >
>> >>> > > > - --
>> >>> > > > Dr Tim Gruene
>> >>> > > > Institut fuer anorganische Chemie
>> >>> > > > Tammannstr. 4
>> >>> > > > D-37077 Goettingen
>> >>> > > >
>> >
>>
>> - --
>> - --
>> Dr Tim Gruene
>> Institut fuer anorganische Chemie
>> Tammannstr. 4
>> D-37077 Goettingen
>>
>> GPG Key ID = A46BEE1A
>>
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>
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