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Dear Rajesh,
are you saying that the computer you are sitting in front of is a
windows computer?
Are you sure you have been using CCP4 and phenix through an
ssh-connection and not the respective windows-binaries?
I am not familiar with windows and the possible existence of
X11-clients, but I would think that most suggestions to you assumed that
your client computer was also a linux-machine.
Cheers,
Tim
On 11/22/2011 02:27 PM, Rajesh kumar wrote:
>
> I don't know if I need that installed on my windows computer terminal.On the server also I could run adxv. Thought of using other ccp4 utilities.
> Thanks for everyone for the help. I give up.
> Regards,Rajesh
>
>> Date: Mon, 21 Nov 2011 11:36:14 -0500
>> From: [log in to unmask]
>> Subject: Re: [ccp4bb] adxv
>> To: [log in to unmask]
>>
>> yum install lesstif ?
>>
>> but wouldn't the motif stuff be required for the X-server, i.e. your terminal, not for the
>> server running adxv?
>>
>> Rajesh kumar wrote:
>>> Dear Mark,
>>>
>>> $ locate XKeysymDB - didnt come with any thing suggests probably openmotif lib is not
>>> installed.
>>> I linux server has Fedora and I am using latest version of Adxv so details on the sbgrid
>>> suggest its same problem.
>>>
>>> So how would I fix this.
>>>
>>> Thanks for your time.
>>>
>>> Regards
>>> Rajesh
>>>
>>>
>>> > Date: Sun, 20 Nov 2011 23:18:32 +0000
>>> > Subject: Re: [ccp4bb] adxv
>>> > From: [log in to unmask]
>>> > To: [log in to unmask]
>>> > CC: [log in to unmask]
>>> >
>>> > Dear Rajesh,
>>> > Are you using the Openmotif library? If so, do you
>>> > have an XKeysymDB file installed?
>>> > In as shell, issue:
>>> > $ locate XKeysymDB
>>> > You may need to symlink it to /usr/X11R6/lib/X11/XKeysymDB if it is
>>> > elsewhere [1].
>>> > I suspect you're not the only one to have seen this [2].
>>> >
>>> > I hope this helps.
>>> >
>>> > Mark
>>> > [1]
>>> ftp://ftp.parallelgeo.com/SPW_Products/Linux/Current_Release/ReadMe_for_recent_Linux_distributions.txt
>>> > [2] http://sbgrid.org/news/newsletters/2009/06 (search for the string "adxv")
>>> >
>>> >
>>> > On 20 November 2011 19:45, Rajesh kumar <[log in to unmask]> wrote:
>>> > >
>>> > > Dear Tim,
>>> > > Thanks. Your suggestion of adding to PATH works and its not completely functional may
>>> be due to the Ximg/ssh or some thing to do with display.
>>> > > All three windows opened but couldn't open any image as it didn't display in the list
>>> of autoload window. Pattern shows *.0.
>>> > >
>>> > > $adxv pin8_1_180.img
>>> > >
>>> > > (standard_in) 1: parse error
>>> > > (standard_in) 1: parse error
>>> > > (standard_in) 1: parse error
>>> > > beam_center x = pixels , mm
>>> > > beam_center y = pixels , mm
>>> > > distance = mm
>>> > > overload = counts
>>> > > pixelsize = 0.172 mm
>>> > > wavelength = Angstroem
>>> > > Adxv Version 1.9.4-beta
>>> > > Copyright (C) 1994-2007 by Andrew Arvai, Area Detector Systems Corporation
>>> > > Using 24-bit TrueColor visual
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: ManagerParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfBeginLine
>>> > > Warning: ... found while parsing ':<Key>osfBeginLine: ManagerGadgetTraverseHome()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
>>> > > Warning: ... found while parsing ':<Key>osfHelp: ManagerGadgetHelp()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: ManagerParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
>>> > > Warning: ... found while parsing ':<Key>osfHelp: Help()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfCancel
>>> > > Warning: ... found while parsing ':<Key>osfCancel: MenuEscape()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
>>> > > Warning: ... found while parsing ':<Key>osfSelect: ArmAndActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: Locale not supported for XmbTextListToTextProperty
>>> > > Warning: Cannot convert XmString to compound text
>>> > > Warning: translation table syntax error: Unknown keysym name: osfPrimaryPaste
>>> > > Warning: ... found while parsing ':m <Key>osfPrimaryPaste:cut-primary()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
>>> > > Warning: ... found while parsing ':<Key>osfSelect: ArmAndActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfPrimaryPaste
>>> > > Warning: ... found while parsing ':m <Key>osfPrimaryPaste:cut-primary()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
>>> > > Warning: ... found while parsing ':<Key>osfSelect: ManagerGadgetSelect()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
>>> > > Warning: ... found while parsing ':<Key>osfSelect: MenuBarGadgetSelect()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: ManagerParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfHelp
>>> > > Warning: ... found while parsing ':<Key>osfHelp: MenuHelp()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfActivate
>>> > > Warning: ... found while parsing ':<Key>osfActivate: DrawingAreaInput()
>>> ManagerParentActivate()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfUp
>>> > > Warning: ... found while parsing ':<Key>osfUp: DrawingAreaInput()
>>> ManagerGadgetTraverseUp()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
>>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfSelect
>>> > > Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfCancel
>>> > > Warning: ... found while parsing '<Key>osfCancel: MenuEscape()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfBeginLine
>>> > > Warning: ... found while parsing ':s c <Key>osfBeginLine: ListBeginDataExtend()'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: translation table syntax error: Unknown keysym name: osfBeginLine
>>> > > Warning: ... found while parsing ':c <Key>osfBeginLine: ActionGrab(SWTopLine)'
>>> > > Warning: String to TranslationTable conversion encountered errors
>>> > > Warning: Locale not supported for XmbTextListToTextProperty
>>> > > Warning: Cannot convert XmString to compound text
>>> > > Warning: Locale not supported for XmbTextListToTextProperty
>>> > > Warning: Cannot convert XmString to compound text
>>> > > No such file: 0.172
>>> > >
>>> > > > Date: Sat, 19 Nov 2011 22:27:25 +0100
>>> > > > From: [log in to unmask]
>>> > > > To: [log in to unmask]
>>> > > > CC: [log in to unmask]
>>> > > > Subject: Re: [ccp4bb] adxv
>>> > > >
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>>> > > > Hash: SHA1
>>> > > >
>>> > > > Dear Raj,
>>> > > >
>>> > > > your first two error messages are because your 'current working
>>> > > > directory' is not part of your bash's PATH variable. As you login, type
>>> > > > export PATH=$PATH:/full/path/to/your/work/adxv
>>> > > > then run adxv.
>>> > > >
>>> > > > I am not sure whether this will prevent the last error to occur, but
>>> > > > since you can run other graphical programs there is a fair chance.
>>> > > >
>>> > > > Cheers,
>>> > > > Tim
>>> > > >
>>> > > > On 11/19/2011 05:53 PM, Rajesh kumar wrote:
>>> > > > >
>>> > > > > Dear All,
>>> > > > >
>>> > > > > I have connected to unix server of the lab through ssh/xming/x11. I can run open
>>> phenix and CCP4 GUI.
>>> > > > >
>>> > > > > I am trying to adxv to see images but I am unable to do so.
>>> > > > >
>>> > > > > I have got two files adxv and adxv.i686FC2 sitting in my work/adxv/.
>>> > > > >
>>> > > > > when i run adxv in bash
>>> > > > > bash: adxv: command not found
>>> > > > >
>>> > > > >
>>> > > > >
>>> > > > > when i run ./adxv in bash
>>> > > > > $ ./adxv /home/raj/work/wen/pin8/pin8_1_001.img
>>> > > > > (standard_in) 1: parse error
>>> > > > > (standard_in) 1: parse error
>>> > > > > (standard_in) 1: parse error
>>> > > > > beam_center x = pixels , mm
>>> > > > > beam_center y = pixels , mm
>>> > > > > distance = mm
>>> > > > > overload = counts
>>> > > > > pixelsize = 0.172 mm
>>> > > > > wavelength = Angstroem
>>> > > > >
>>> > > > > ./adxv: line 39: adxv.i686FC2_static: command not found
>>> > > > >
>>> > > > > when i do
>>> > > > > $ ./adxv.i686FC2_static /home/raj/work/wen/pin8/pin8_1_001.img
>>> > > > >
>>> > > > > -X11TransSocketINETConnect() cnat get address for loaclhost:6011: name or service
>>> not known
>>> > > > > error: cannot open display
>>> > > > >
>>> > > > > I cant use Nxclient.
>>> > > > >
>>> > > > > Thanks
>>> > > > > Raj
>>> > > > >
>>> > > >
>>> > > > - --
>>> > > > Dr Tim Gruene
>>> > > > Institut fuer anorganische Chemie
>>> > > > Tammannstr. 4
>>> > > > D-37077 Goettingen
>>> > > >
>
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
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