FYI, I have successfully used rfxplot
(http://rfxplot.sourceforge.net/index.html) with SPM8.
-------------------------------------------------------------------------------
Bob Spunt
Postdoctoral Fellow
Social Cognitive Neuroscience Lab - www.scn.ucla.edu
Department of Psychology
University of California, Los Angeles
On Fri, Oct 7, 2011 at 8:08 AM, Darren Gitelman
<[log in to unmask]> wrote:
> Hi
>
> You can find the getpsth code here:
> http://brainimaging.tiddlyspot.com/#getpsth
>
> Jan Glascher's rfxplot is really excellent. I'm surprised it doesn't work
> with SPM8.
>
> Darren
>
> On Fri, Oct 7, 2011 at 7:46 AM, S.F.W. Neggers <[log in to unmask]>
> wrote:
>>
>> Dear Rich,
>>
>> I always use get_psth for this, a matlab function. You can completely
>> script it, with more options than the SPM GUI, and receive and proces the
>> results (vector with time points and one with confidence intervals) during a
>> function call in your script. Also, by looping over subjects you can, for
>> example, average these curves too. I then plot these curves in matlab and
>> provide axes etc that look nice in a paper.
>>
>> Type 'help get_psth' for syntax.
>>
>> On a side note: I kind of forgot whether this function is now in the spm8
>> repo by default. When I remember well it was an extension for earlier SPM
>> versions, but it now appears in my spm8 folder. I don't remember whether I
>> put it there myself or not ;-)
>> From the comments in the code it seems a standard function now.
>>
>> Good luck,
>>
>> Bas
>>
>> Op 07-10-11 00:31, Richard Morris schreef:
>>>
>>> Dear all,
>>>
>>> I'm interested in creating some figures of the event-related PSTH. I'm
>>> using SPM8, and presently the only way I know how to see the PSTH is using
>>> the plot button on a first-level design (individual subject). However, when
>>> the PSTH is plotted in the matlab figure window, I can't seem to find the
>>> actual data points which were used to make the figure. Any hints? I need to
>>> export the data to my graphing program.
>>>
>>> What other toolboxes works with SPM8 to construct PSTH curves from group
>>> data? I used to use Jan Glascher's excellent rfxplot, but this no longer
>>> works with my install of SPM8.
>>>
>>> Ta,
>>>
>>> Rich
>>
>>
>> --
>> --------------------------------------------------
>> Dr. S.F.W. Neggers
>> Division of Brain Research
>> Rudolf Magnus Institute for Neuroscience
>> Utrecht University Medical Center
>>
>> Visiting : Heidelberglaan 100, 3584 CX Utrecht
>> Room B.01.1.03
>> Mail : Huispost B01.206, P.O. Box 85500
>> 3508 GA Utrecht, the Netherlands
>> Tel : +31 (0)88 7559609
>> Fax : +31 (0)88 7555443
>> E-mail : [log in to unmask]
>> Web : http://www.neuromri.nl/people/bas-neggers
>> : http://www.neuralnavigator.com (CEO)
>> --------------------------------------------------
>>
>>
>>
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>
>
> --
> Darren Gitelman, MD
> Northwestern University
> 710 N. Lake Shore Dr.
> Abbott 11th Floor
> Chicago, IL 60611
> Ph: (312) 908-8614
> Fax: (312) 908-5073
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