Hi Sam
Except for torsion angles, here is a good tutorial for you (the second one)
http://www.ysbl.york.ac.uk/mxstat/JLigand/
Andrey
On 29 Sep 2011, at 22:12, Sam Arnosti wrote:
> Hi every one
>
> I have a problem with docking my ligand into the electron density map and make the connections ( bonds ) with the protein.
>
> It is a Lysine residue that makes a Schiff Base with a long chain aldehyde.
>
> I do not know how to make the bonds and control the torsion angles of the ligand.
>
> I am using the CCP4 and Coot program for refining.
>
> Thanks
>
> Sam
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